Mycolicibacterium smegmatis INHR2: LI98_09690
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Entry
LI98_09690 CDS
T03432
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03420
Nucleotide excision repair
msh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LI98_09690
03430 Mismatch repair
LI98_09690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msh03400
]
LI98_09690
Enzymes [BR:
msh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LI98_09690
DNA repair and recombination proteins [BR:
msh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LI98_09690
MMR (mismatch excision repair)
Other MMR factors
LI98_09690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIU20411
LinkDB
All DBs
Position
2020509..2023772
Genome browser
AA seq
1087 aa
AA seq
DB search
MQARYSPVELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGF
ATPSQVLGLTFTRKAAGQLLRRVRTRLARLAGAGLAPGSGASDESATVSTYHAFAGTLLR
EHGLLLPVEPDTRLLSETELWQLAYDVVCAHPGHLDTEKTPAAVTAMVLRLSGALAEHLV
DTDQLRDTHVELERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELVPLIDALHQRMRA
EKVMDFGMQMAAAARLAARFPQVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFGGGADD
GLALTAVGDPIQSIYGWRGASATNLPRFTTDFPYSDGTPAPTLELRTSWRNPPSTLHVAN
AVSEEARRRSVAVRALRPRPDAEPGTIRCALLNNVAAERDWVADHLARAYHGAIGRGEAA
PTAAVLVRRNADAAPMAEALTARGVPVEVVGVAGLLAVPEVADLVAMLRLIADPTAGSAV
MRILTGPRWRFGARDIAALWRRAVELDDRPKGELGTADIVAQAAPDADTACVADAICDPG
DAERYSPAGYERIVALGRELTMLRAHLGHPLPELVAEVRRVLGLDAEARAARPVAAGWAG
TENLDRFSDLVSDFAGHAGASVSALLAYLDAAVEVENGLAPAELTVSHDRVQILTVHAAK
GLEWQVVAVPHLSARVFPSTTQARTWLTDASDLPPLLRGDRATESEIGVPVLDTSDIYDR
KILSDKISDHKKSLDQRRVDEERRLLYVAITRAEDTLLLSGHHWGATESKPRGPSEFLCE
LKTILEEATAAGTPCGEIEHWAPDPAPGETNPLRDQVVEALWPPVASADDHVHRGAQLVA
AAMAGEVSAEADQEGWAADVDALLAERERPPQQEDTELPGQLSVSTLVELSRDPKAALTR
LRRRLPQRPDPHALLGTTFHEWVQRYFHAERLFDLDDLPGAVDSDSGRAVEESLAELQDA
FVKSPWAARTPVEVEVPFDMVLGETVVRGRIDAVFAEPDGTTMVLDWKTGDPPETPEAKE
HAAVQLAVYRLAWAAMRGCPPESVRAAFHYVRSGQTVIPETLPGAEELVKLLAAAPTETA
EEADRIT
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggcgcgatacagcccggtcgagctctcggcggccctcgggcttttcccgcccacc
gatgaacaggccgcggtgatcgccgcgccgccagggccgctggtcgtgatcgccggtgcc
ggtgcgggcaagaccgagaccatggctgcgcgcgtggtgtggttggtggccaacgggttc
gccacgccgtcgcaggtgctgggtctgacattcacgcgcaaggccgccggtcagctgctg
cgccgggtccgcacgcggctcgcgcgtctggccggtgccggactggcaccgggctcgggt
gcgtccgacgaatcggcgaccgtcagcacctaccacgcgttcgcgggaaccctgctgcgt
gagcacggcctattgctgcccgtcgaacccgacacccggctgctcagcgagaccgagctg
tggcagctggcctacgacgtggtgtgtgcccaccccggacacctcgacaccgagaagacc
ccggccgccgtcaccgcgatggtgttgcggctctcgggcgcactcgccgagcatctcgtg
gacaccgaccagttgcgggacacacacgtcgaactggagcgactggtccacaccctgccc
gccgggccgtatcagcgtgaccgcgggcccagccagtggctgctgcgcatgctcgccacc
caaaccgagcgcaccgaactggtgccgctcatcgacgcgctgcaccagcgcatgcgcgcc
gagaaggtcatggacttcggcatgcagatggccgcggccgcacgcttggcggcgcggttc
ccgcaggtgggcgagcaactgcggcagcgctttcgcgtggtgctgctcgacgagtaccag
gacaccggccacgcgcagcgcatcgcgttgtcgtcgttgttcggcggcggtgccgacgac
ggtctcgcgctcaccgcggtgggcgatccgatccagtcgatctacggctggcgcggggcc
tcggcgaccaacctgccgcggttcaccaccgatttcccgtactccgacggcacccccgcg
ccgacgctggagctgcggaccagttggcgcaacccgcccagcacgctgcacgtggccaac
gcggtctccgaggaagcgcgccgccgctcggtggccgtccgcgcactgcggccccggccc
gacgccgaacctggcacgatccgctgcgcgttgctgaacaacgtcgccgccgaacgcgac
tgggtcgcagaccatctcgcccgtgcctaccacggcgccatcggacgcggcgaggccgcg
cccaccgcggcggtgctcgtgcggcgcaacgccgacgccgcgccgatggcagaggcgctc
accgcccgcggcgttcccgtggaggtcgtcggtgtcgccgggctgctcgccgtgcccgag
gtcgccgacctggtcgcgatgctgcggctgatcgccgacccgaccgccggttcggcggtc
atgcggatcctcaccggtccgcgctggcggttcggtgcccgtgacatcgccgcgctgtgg
cggcgtgccgtcgaactcgacgaccggccgaaaggcgaactgggcacggcggacatcgtc
gcgcaggcagcacccgacgccgacaccgcgtgcgtggccgacgcgatctgcgacccggga
gatgccgaacggtattcgcctgccgggtacgagcgcatcgtcgcgctgggacgtgaactc
accatgcttcgcgcgcacctgggccatccgctgccggaactggtcgccgaggtgcgccgc
gtgctgggcctggacgccgaggcccgcgccgcacgccccgtcgcggccgggtgggcaggc
accgagaacctcgaccggttcagcgatctggtgtccgatttcgccgggcacgcaggcgca
tcggtatcggcgttgctcgcctacctcgatgccgcggtggaggtcgagaacggtctggcc
ccagcggaactcacggtgtcgcacgaccgcgtgcagatcctcaccgtccacgcggccaag
ggactggaatggcaggtggtggcggtgccgcacctgagtgcccgggtgttcccgtcgacc
acccaggcgcggacatggctgaccgatgcctccgacctgccgccgctgctgcgcggtgac
cgtgccaccgagtccgagatcggcgtcccggtgctggacacgtctgacatctacgaccgg
aaaatcctgtccgacaagatttctgaccacaagaagagcctggatcagcggcgggtggat
gaagagcgtcggctgctgtacgtcgcgatcacccgtgcggaggacacgctgctgctgtcc
gggcatcactggggcgccaccgagagcaaaccgcgcgggccctcggagttcctgtgcgag
ctgaagaccatcctggaagaggccacggcagcgggtacgccgtgcggtgagatcgagcac
tgggcaccggatcccgcaccgggcgagaccaatccactgcgcgatcaggtggtcgaggcg
ctgtggccgccggtggcctccgccgatgaccatgtgcaccgcggtgcgcaactggtcgcc
gccgcgatggccggtgaggtgagcgccgaggccgatcaggagggctgggccgccgacgtc
gacgcactgctggccgaacgcgagcgcccaccgcaacaggaggacaccgaactgccgggt
cagctgtcggtgagcaccctggtcgaactcagccgtgacccgaaggccgcgctgacgcgg
ctgcggcgccgcctaccgcaacggcctgatccacatgccctgctgggcaccacattccac
gagtgggtgcagcgctacttccatgccgagcgcctcttcgacctcgacgaccttcccggt
gcggtcgacagtgacagcggacgcgccgtcgaggagagcctggccgaactgcaggacgcg
ttcgtcaaatccccgtgggccgcgcgcaccccggtggaggtcgaggtgccgttcgacatg
gtgctcggcgagaccgtcgtgcggggccgcatcgacgcggtgttcgccgaaccggacggc
accaccatggttctcgactggaagaccggcgacccgccggaaactccggaggccaaggaa
catgcggcggttcagctcgcggtgtaccggctggcgtgggcggcaatgcgcggctgcccg
cccgagtcggtgcgcgcggcgttccactatgtccgttccggtcagaccgtcatccccgaa
accctgcccggagcagaagaactggtgaaactgctcgccgcagcgccgaccgaaacagcc
gaggaagccgaccggatcacgtga
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