Mycolicibacterium smegmatis INHR2: LI98_14980
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Entry
LI98_14980 CDS
T03432
Name
(GenBank) sigma 54 type regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
msh
Mycolicibacterium smegmatis INHR2
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msh03000
]
LI98_14980
Transcription factors [BR:
msh03000
]
Prokaryotic type
Helix-turn-helix
Other families
LI98_14980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MimR_N
HTH_8
AAA_lid_14
HTH_50
Xre-like-HTH
HTH_23
Sigma54_activat
TIP49
HTH_30
AAA_16
DUF134
HTH_Tnp_ISL3
HVO_A0261_N
UBA_At5g58720
TsaE
HTH_29
HTH_11
HTH_17
HTH_28
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AIU21413
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Position
3076393..3078111
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AA seq
572 aa
AA seq
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MSTRRNEARIEDIRAQFLTASEPGRAVPADLLESWVRSKAALGTPANVRDVPQVDEDLLD
NHLVEMFQAPMARVAEDLGGSGMGLLLADAEGRILQRWSQDASAMSHLDRLGTVRGAVLA
EDTVGTNGVGTVIAAGKSVQIAGAEHFADIYRTAVCTGAPVWHPLSGKLLAVVTVSTMLS
ERSGLLVPLTNSVAAQLEQHVLDVAQPGARAMLAAFLESSARHAGPVVAFGPDGLTMRSR
RAGELTQTDVDTINHLCAGLRRDVQVTAELSVGPTVIDVAALDGGAGVVAALRPAPRSSA
AHSIASSSALVGQSKSWRAVAHRVSRHIATREPILVAGELGTGKTSLALGRPFSAGAADT
ATIVHGAERQIVGDQTWLQRVADAVEAGPVVIRGAEHVDGHVLAAVRTLIDGQRGTTPIV
LTMTAALRAEAESAAGRFGVPMVWVPPLRERVSDIGVLWNSFVAQCSPGARLPLADAARQ
ALEAAGWPGNLSDLRGAVDTVLASGKRGTVQVDDLPDTLRSRRTWTLMERTEIEAIRRAL
QEADGNRSKAAELLGVSRATIHRKMKTYHLSG
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacacggcgcaacgaggcccgcatcgaggacatccgtgctcagttcctgacagcg
tccgagccgggccgtgccgtgccggccgatctgctggagtcgtgggtgcggtccaaggca
gccctggggacaccggcgaacgtccgcgacgtgccgcaggtggacgaggatctgctcgac
aaccacctggtggagatgttccaggcgcccatggcgcgggtcgccgaggatctcggtggc
tcgggtatgggcctgctgctggccgacgccgagggtcggatcctgcagcgctggtcgcag
gacgcatcggcgatgagccatctcgaccggctcggcacggtccgcggtgcggtcctggcc
gaggacacggtaggcaccaacggcgtcggcacggtgatcgcggctggcaagagcgtccag
atcgccggtgccgaacacttcgccgacatctaccgcaccgcggtgtgcaccggggcgccg
gtgtggcatccgctttcgggcaaactgctcgcggtggtgacggtgtcgaccatgctcagc
gaacgcagtggcctgctcgtgccgttgaccaactccgttgctgcgcaactcgaacagcat
gtgctcgacgtggcccagccgggcgcccgcgccatgctcgcggcgttcctggagtcctcg
gcccggcacgccggcccggtggtggccttcggccccgacgggctgacgatgcgcagccgc
cgcgccggcgagctcacgcagactgacgtcgacaccatcaaccatctgtgtgcggggctg
cgccgcgatgttcaggtgacggccgagttgtccgtgggcccgacggtcatcgacgtcgcc
gcactcgacggcggcgccggggtggtcgcggcgctgcgtccggccccgagatcgtcggcc
gcgcacagcattgcgtcgtcgtcggcgctggtggggcagtcgaagtcatggcgtgccgtc
gcgcaccgcgtcagcaggcacatcgccacccgcgaaccgattctggtggcgggggagtta
ggcaccggcaagacctcgctcgcgctcggccggccgttctcggccggcgcagcggatacc
gcgacgatcgtgcacggggccgaacggcagatcgtcggcgaccagacctggttgcagcgc
gtggccgacgcggtcgaggcgggcccggtggtgatccgcggggccgagcacgtcgacggc
cacgtcctggccgcggtccggaccctcatcgacgggcagcggggcacgaccccgatcgtg
ctcaccatgacggccgcgctcagggccgaggcggaatcggcggccggccggttcggggtg
cccatggtgtgggtgccgccgctgcgtgaacgtgtgtccgatatcggtgtgttgtggaat
tcctttgtcgcccagtgctcgccgggcgcgcgcctcccgctcgcggacgccgcgcgccag
gcgctggaggccgcggggtggccggggaacctgtcagacctgcgcggtgccgtcgacacc
gtgctggcgtcgggcaagcgcggcacggtgcaggtcgacgacctgcccgacaccctgcgc
agccgtcgcacctggacgctgatggagcgcaccgagatcgaggcgatccggcgggccctt
caggaggcagatggcaaccgatccaaggcggccgaactgctgggcgtgtccagggcgacg
atccaccggaagatgaagacgtaccacctttccggctga
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