Mycolicibacterium smegmatis INHR2: LI98_15810
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Entry
LI98_15810 CDS
T03432
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03030
DNA replication
msh03430
Mismatch repair
msh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LI98_15810
03430 Mismatch repair
LI98_15810
03440 Homologous recombination
LI98_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msh03032
]
LI98_15810
03400 DNA repair and recombination proteins [BR:
msh03400
]
LI98_15810
Enzymes [BR:
msh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LI98_15810
DNA replication proteins [BR:
msh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LI98_15810
DNA repair and recombination proteins [BR:
msh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LI98_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AIU21578
LinkDB
All DBs
Position
3253077..3256631
Genome browser
AA seq
1184 aa
AA seq
DB search
MSGTDGRSSGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFY
NSATKAGIKPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGL
RNLFKLSSLASFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHEREALEA
AAKWREIFGPENFFLELMDHGLDIERRVREGLLEIGRKLGIPPLATNDCHYVTREAARNH
EALLCVQTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYAD
VWEPRDRMPVFPVPEGHDQASWLTHEVKAGLERRFRGGPVPEEYTTRAEYEIKVICDKGF
PSYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP
SAPDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQPGFAI
ADRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGLEGLV
RNAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII
GDAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQPTGFN
DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQI
MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILP
FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGIT
VLPPDVNESEHNFASVGDDIRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYLNKIDI
TACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGEDTG
TDAVFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGDVA
NDAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFPQTYSLFGADIADDVVVL
VKAKVAARDDRIALIAHELIVPDFSSAQADRPLSVSLPTRQCTIDKVTALKQVLANHPGT
SQVHLRLISGERITTLELDQSLRVTPSSALMGDLKALLGPGCLG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacagacggacggtcctcggggtcttttgtccacctgcataaccacactgag
tactcgatgctggacggcgccgcgaagatcacgcccatgctggccgaggcgcagcggttg
gagatgcctgccatcggcatgaccgaccacgggaacatgttcggcgccagcgagttctac
aactcggcgaccaaggccggcatcaaacccatcatcgggatcgaggcctacatcgcgccc
ggttcccggttcgacaccaagcgcgtcacatggggcgacccgggccagaagggcgacgac
gtctccggcagcggtgcgtacacgcacatgacgatggtcgccgagaacgcgacgggcctg
cgcaacctgttcaagctgtcctcgctggcgtcgttcgaggggcagctgggcaagtggtcg
cgtatggacgccgagatcatcgccgagcacgccgagggcatcatcgccaccaccggctgc
ccgtcgggcgaggtccagacccgcctgcgcctcggccacgagcgcgaggcgctcgaagcc
gcggcgaagtggcgcgagatcttcggcccggagaacttcttcctcgaactgatggaccac
ggtctcgacatcgagcgccgggtccgcgagggcctgctggagatcggccgcaagctcggc
atcccgccgctggccaccaacgactgtcactacgtcacgcgtgaggccgcacgcaaccac
gaggcgctgctgtgtgtgcagacgggcaagaccctctcggatcccacgcggttcaagttc
gacggtgacggctacttcctcaagtccgccgaggagatgcgggcgctgtgggacagccag
gtgcccggcgcgtgcgattcgacgctgctgatcggcgagcgggtgcagtcctacgccgac
gtgtgggaaccgcgtgaccgcatgccggtgttcccggtgcccgaagggcacgaccaggcg
tcgtggctcacccacgaggtgaaggccggtctggagcggcggttccgcggtggcccggtg
cccgaggagtacaccacgcgcgccgagtacgagatcaaggtcatctgcgacaagggattt
ccgtcgtacttcctcatcgtcgccgacctgatcaactacgcgcgttcggtgggcatccgc
gtggggcccggtcgtggttcggcggcgggatcgctcgtggcatacgccctcgggatcacc
aacatcgacccgatcccgcacggtctgctgttcgagcgcttcctcaacccggagcgtccg
tccgcgcccgatatcgacatcgacttcgacgaccgtcgccgcggcgagatgctgcgctac
gccgccaacaggtgggggagcgagcgcgtcgcgcaggtcatcacgttcggcaccatcaag
accaaggcggcgctgaaggattcggcccgcgtgaacttcggccagcccggtttcgcgatc
gccgaccggatcaccaaggcgctgccgccgcccatcatggccaaggacatcccgctgtcg
ggtatcaccgacccgaaccacgagcggtacaaggaggccgccgaggtccgcggtctgatc
gacaccgatccggacgtgcgcaccatctatgagaccgcgcgcggtctcgaaggcctggtc
cgcaacgcgggtgtgcacgcctgcgcggtgatcatgagctccgaaccgctcatcgacgcg
atcccgctgtggaagcgtccgcaggacggcgcgatcatcaccggctgggactatccgtcg
tgtgaggccatcggcctgctgaagatggacttcctgggcctgcgcaacctcacgatcatc
ggcgacgcgatcgccaacatcaaggccaaccgcggcatcgacctggacctggagacgctg
ccgctcgacgacccggcggcctacgaattgctctcgcgcggtgacaccctcggcgtgttc
cagctcgacggcgggcccatgcgcgacctgctgcggcgcatgcagcccacgggcttcaac
gacatcgtcgcggtgctcgcgctgtaccgccccggtccgatgggcatgaacgcccacaac
gactacgccgaccgaaagaacggccggcaacccatcaagcccatccaccccgagctcgaa
gaaccgctcaaggacatcctggccgagacctacggcctgatcgtctaccaagagcagatc
atgttcatcgcgcagaaggtcgcctcctacaccatgggtaaggccgacgcgctgcgaaaa
gccatgggcaagaagaagcttgaggtgctcgaggccgagtacaagggcttcaaggaaggc
atgaccgccaacgggttctccgagggtgcggtcaaggcgctgtgggacacgatcctcccg
ttcgccggttacgcgttcaacaagtcgcacgccgcgggctacggcctggtgtcgtactgg
acggcctacctcaaggccaactatccggccgagtacatggcaggcctgctcacctcggtc
ggtgacgacaaggacaaggccgcggtctacctggcggactgccggcgcctgggcatcacg
gtgctgccgccggacgtcaacgagtcggagcacaacttcgcctcggtcggcgacgacatc
cgattcggcctcggcgccatccgcaacgtcggcgccaacgtcgtctcgtcactgatcaag
acccgcaccgagaagggcaagttcaccgacttctcggactacctcaacaagatcgacatc
acggcctgcaacaagaaggtcaccgaatcgctgatcaaggcgggcgctttcgattcgttg
gggcatccgcgcaagggcctgttcctggtgcacaccgacgccgtcgactcggtgctgggt
accaagaaggccgaggcgatggggcagttcgacctgttcgggggcggcgaggacaccggg
accgacgcggtgttcaccatcaaggtccccgacgaggagtgggaggacaagcacaaactc
gcactcgaacgcgagatgctcggcctctacgtgtccgggcacccgctcaacggcgtcgcg
cacctgctggccaaccaggtcgacacccagatcccggcgatcctcgacggcgacgtcgcc
aacgacgcgcaggtgctggtgggcggcatcctggcctcggtcaaccgccgcgtcaacaag
aacggtctgccgtgggcgtcggcccagttggaggacctcaccggtggtatcgaggtgctg
ttcttcccgcagacctactcgctgttcggcgccgacatcgccgacgacgtcgtggtgcta
gtcaaggccaaggtggccgcacgtgacgaccggatcgcgctgatcgcccacgagttgatc
gtgcccgacttcagcagtgcgcaggccgatcgtccgttgtcggtcagccttcccacccgg
cagtgcaccatcgacaaggtcaccgcgctcaagcaggtgctcgccaaccaccccggcacg
tcgcaggtccacctgcggttgatcagcggtgagcggatcaccacgctcgagctcgaccaa
tcgctgcgcgtgaccccgtcatcggcgttgatgggcgatctcaaggcgctgctcggcccc
ggctgcctcggctga
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