Mycolicibacterium smegmatis INHR2: LI98_22890
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Entry
LI98_22890 CDS
T03432
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LI98_22890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msh03019
]
LI98_22890
03009 Ribosome biogenesis [BR:
msh03009
]
LI98_22890
Enzymes [BR:
msh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LI98_22890
Messenger RNA biogenesis [BR:
msh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LI98_22890
Ribosome biogenesis [BR:
msh03009
]
Prokaryotic type
rRNA processing factors
LI98_22890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AIU22935
UniProt:
A0A653FBJ8
LinkDB
All DBs
Position
complement(4709960..4713073)
Genome browser
AA seq
1037 aa
AA seq
DB search
MAEDAHTEDLSTQTPQQEGLPERLRVHSLARVLGTTSRRVLDALAEFDGRQRSAHSTVDK
ADAERVRAALTESPAAETPPEEAPAAETPVADLVVVQAEQVEVVTVSEAGPAEPAEPAEP
EAPAAEAEAEAETEVADEAETPEPTFRGAVLVGDEPESRLILEHANIPPARETQTERPDY
LPLFVAPQPVSFEPAVVDDEDEDDDTETGAESDFDSGADSDSDDDQADRPRRRRRGRRGR
GRGRGEQNDDATSDADTDSTEDQTDGDEQESGEDSDDSGDEDSTTTEGGTRRRRRRRRRK
SGSGDSDDAVSPDDPPNTVVHERAPRTERSDKSDDSEIQGISGSTRLEAKRQRRRDGRDA
GRRRPPILSEAEFLARREAVERTMIVRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSA
ASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALK
PGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILR
EVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRWSEIEAKAAEVTEKKAGAAVALYEEPD
VLVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEAVAPDLMPRLTKYEPAGPDAPDVFAVH
RIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAE
EIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLT
RKRLGTGLVEAFSTACTHCGGRGIVLHGDPIDSASSNGGRKSDSSGGGGSGGGRRGKRGK
KGAARTEEVHVAKVPDHTPGEHPMFKAMAAANGKHEGDEDHEDHEDHETAEDTTAAEVRD
DTRDEHDADERAHVVTAAVGAAGDEDLDDSDEDSDLDSDEESDDESDEDEIELDDDEDEL
DEDIEVIGDSDDSDDSDDSDEDDDSDDSDDDSDEDEDSDSDEDEEPVREVYEPPVTAPRA
RVRRRAAARPAGPPSHD
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagatgcccataccgaagacctatcaacccagactccccagcaggagggactc
ccagagcgtctgagagtccattcactggcccgtgtcctgggcaccaccagtcggcgcgtg
ctcgacgccctggccgagttcgacgggcgccagcgcagcgcccattcgacggtcgacaag
gccgacgccgagcgggtccgcgcggcgctcaccgagtcccccgcagcggagacgcccccc
gaagaagcgcccgcggcggagacgcccgtggccgatctggtcgtggtgcaagccgagcag
gtcgaggtcgtgacggtctccgaggccgggcctgccgaacctgccgaacctgccgaaccc
gaagctcccgcagccgaggccgaagccgaggccgaaaccgaggtcgcggacgaagccgag
accccggagcccacgttccgcggcgcagtcctcgtgggtgacgaacccgagtcgcggctc
atcctggagcacgccaacatcccgccggcccgcgagacgcagaccgagcgccccgactac
ctgccgctgttcgtggcgccgcagcccgtgagcttcgagcccgccgtcgtcgacgacgag
gacgaggacgacgacaccgagaccggtgccgaatccgatttcgattccggggccgactcc
gactccgacgacgaccaggccgaccggccgcgccggcgccgccgtggccgtcgcggacga
gggcgtggccgtggcgagcagaacgacgacgccacatcggacgccgacaccgactccacc
gaggatcagaccgacggtgacgagcaggagtcaggtgaggactccgacgacagcggcgac
gaggacagcaccaccaccgagggcggcacccgcaggcgccgtcgccgcaggcggcgcaag
agcggctcgggcgacagcgacgacgccgtctcgcctgacgacccgccgaacaccgtcgtc
cacgagcgcgccccgcggaccgagcgcagcgacaagagcgacgactccgagatccagggc
atcagcggctccacgcggctggaggccaagcgtcagcgtcggcgcgacggccgcgacgcc
ggccgccgccgcccgccgatcctgagcgaggccgagttcctggcccgccgcgaggccgtc
gaacgcaccatgatcgtgcgcgacaaggtgcgcaccgaaccgccgcacgagggtgcgcgc
tacacgcagatcgccgtgctcgaagacggcgtggtggtcgagcacttcgtgacgtcggcg
gcctctgcttcgctggtgggcaacatctacctgggcatcgtccagaacgtgctgccgtcc
atggaggccgcgttcgtcgacatcggccgcggccgcaacggcgtgctctacgccggtgag
gtgaactgggaggccgcaggtctgggcgggcagaaccgtaagatcgagcaggcgctcaag
ccgggcgactacgtcgtcgtgcaggtcagcaaggaccccgtcggccacaagggcgcccgc
ctcaccacgcaggtgtcgctggccggccgctatctggtgtacgtgcccggcgcgtcgtcc
accggcatcagccgcaagcttcccgacaccgagcgtcagcgtctcaaggagatcctgcgt
gaggtggttccgtctgatgcaggcgtgatcatccgcacggcctcggagggcgtcaaggaa
gaggacatccgctccgacgtcgaacggctccagaagcgctggtccgagatcgaggccaag
gccgccgaggtcaccgagaagaaggccggcgccgccgtggcgctctacgaagagcccgac
gtgctggtcaaggtgatccgcgacctgttcaacgaggacttctccagcctgatcgtctcc
ggcgacgaggcctggaacaccatcaactcctacgtagaggccgtcgcgcccgacctcatg
ccacggctcaccaagtacgagcccgcgggacccgacgcacccgacgtgttcgcggtgcac
cgcatcgacgagcagctcgcgaaggccatggaccgcaaggtgtggctgccctcgggcggc
accctggtgatcgaccgcaccgaggccatgaccgtcgtcgacgtcaacaccggcaagttc
accgggtcgggcggcaacctcgagcagaccgtgacgcgcaacaacctggaggccgccgag
gagatcgtgcggcagctgcggctgcgcgacatcggcggcatcgtcgtcatcgacttcatc
gacatggtcctggaatccaaccgcgatctggtgctgcgccgcctgaccgaggcgctcgcg
cgggaccgcacgcggcaccaggtgtccgaggtgacctcgctggggttggtgcagctcacg
cgtaagcgcctgggcaccgggttggtcgaggcgttctcgacggcgtgcacgcactgcggt
gggcgcggcatcgtcctgcacggcgatcccatcgactccgcgtcgtccaacggcgggcgc
aagtccgactcgagcggcggcggtggcagcggtggtggccggcgcggcaagcgcgggaag
aagggcgccgcccgcaccgaagaggtgcacgtcgcgaaggtcccggaccacacgccgggt
gagcatccgatgttcaaggccatggcggctgccaacggcaagcacgaaggcgacgaggac
cacgaggaccacgaggaccacgagaccgccgaggacaccaccgcggccgaggtccgggac
gacacgcgcgacgagcacgacgccgacgagcgcgcccacgtcgtgaccgcggccgtcggg
gctgcgggcgacgaggacctcgacgactcggatgaggattcggacctggattccgacgag
gaatccgacgacgagtcggacgaggacgagatcgaactcgacgacgacgaggacgaactc
gacgaggacatcgaggtgatcggcgactccgatgactccgacgactccgacgactccgac
gaagacgacgactcggatgactccgacgacgactccgacgaagacgaggactcggactcg
gatgaggacgaagagccggtccgggaggtctacgagccgccggtgacggcgccgcgcgca
cgggtgcgccgccgggccgcggcacgtccggcggggccgcccagccacgactag
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