Mycolicibacterium smegmatis INHR2: LI98_24945
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Entry
LI98_24945 CDS
T03432
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LI98_24945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msh03019
]
LI98_24945
03009 Ribosome biogenesis [BR:
msh03009
]
LI98_24945
Enzymes [BR:
msh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LI98_24945
Messenger RNA biogenesis [BR:
msh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LI98_24945
Ribosome biogenesis [BR:
msh03009
]
Prokaryotic type
rRNA helicases
LI98_24945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
P-loop_SecA
adh_short
Flavi_DEAD
Surface-like_ins_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIU23328
LinkDB
All DBs
Position
complement(5136651..5138396)
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AA seq
581 aa
AA seq
DB search
MTSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD
VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN
VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG
FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI
QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE
RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA
VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR
LIEDYERESNVPLADIAAALAVQTRNGEEFLMTEPPPDKRRDRDRDRDDRGDRGPRKERP
PREGLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVELPEKLPKKT
LKALENTRISGVLINLQPDRGPRREGAGKPSGKYKPHRKVK
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgcaagaaccggatccgagtccggtaaccaactcggattcggcccctactgaa
ccgactttcgccgacctgcagattcaccccgccgtgctgcaggcggtcaccgacgtcggc
tacgaatcgccgtcggcgatccaggccgcaaccattcctcccatgctcgcgggctccgac
gtggtgggcctggcccagaccggtacgggcaaaaccgcggcgttcgccatcccgatcctg
tcgaagatcgacacgtcgcgcagggacacccaggccctggtgctggccccgactcgtgag
ctcgcgctgcaggtcgcggaggccttcggccgctacggctcgcacctgccccaggtcaac
gtgctgccgatctacggcggctcgtcctacaccgtgcagctgtccggcctgcgccgcggc
gcgcaggtggtggtgggcacgcccggccgcgtgatcgaccatctcgaacgcggcacgctg
gacctgtcgaagctcgactacctggtgctcgacgaggccgacgagatgctcaccatgggc
ttcgccgaggaggtcgagcggatcctcgccgacacccccgagtacaagcaggtcgcgctg
ttctcggcgaccatgcccgcggcgatccgcaagatcaccaccaagtacctgcacgatccg
gtcgaggtcacggtcaaggcgaaaaccgccacggccgagaacatctcacagcggttcatc
caggtggccggcccgcgcaagatggacgcgctgacccgcatcctcgaggtcgaggagggc
gacgcgatgatcgtgttcgtccgtaccaagcaggccaccgaggaggtcgccgaccgtctc
aaggcccgcgggttcgccgcggccgcgatcaacggcgacatcaaccaggcgcagcgcgaa
cgcaccatctccgcgctcaaggacggcacgatcgacatcctgatcgcgaccgacgtcgcc
gcgcgtggtctggacgtggagcggatctcgcacgtcatcaactacgacatccctcacgac
accgagtcctacgtgcaccgcatcggccgcacgggccgtgccggacggtcggggcacgcg
gtgctgttcgtgaccccgcgtgagcgtcacctgctcaagtcgatcgagaaggccacgcgg
tccaagctcatcgaagccgagctgcccagcgtcgaggacgtcaatgcccagcgcgtcgcg
aagttccgcgactcgatcagcgattcgctcaacgcaccgggcatcgacctgttccgtcgt
ctcatcgaggactacgagcgcgagagcaacgtgccgctggccgacatcgccgcggcgctc
gcggtgcagacgcgcaacggcgaagagttcctcatgaccgaaccgccgccggacaagcgg
cgtgaccgtgaccgcgaccgcgacgaccgcggcgaccggggtccgcgcaaggagcgcccg
ccgcgcgaaggccttgcgacctaccgcatcgacgtcggcaagcgccacaaggtcggcccc
ggccacatcgtgggcgcgatcgccaacgagggcggactgcaccgcaacgagttcggccat
atcaccatccgcctggactactcgctggtggagttgccggagaagctgccgaagaagacg
ctcaaagcgcttgagaacacccgcatctccggggtgttgatcaacctgcagcctgaccgt
ggaccgcgacgggaaggggcgggcaagccttcgggcaagtacaagccacaccggaaggtg
aagtga
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