Mycolicibacterium smegmatis INHR2: LI98_30460
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Entry
LI98_30460 CDS
T03432
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msh03032
]
LI98_30460
03400 DNA repair and recombination proteins [BR:
msh03400
]
LI98_30460
Enzymes [BR:
msh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LI98_30460
DNA replication proteins [BR:
msh03032
]
Prokaryotic type
DNA Topoisomerases
LI98_30460
DNA repair and recombination proteins [BR:
msh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LI98_30460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AIU24401
LinkDB
All DBs
Position
complement(6226447..6229257)
Genome browser
AA seq
936 aa
AA seq
DB search
MAGGDRGSGGTGNVRRLVIVESPTKARKIAGYLGSNYVVESSRGHIRDLPRNAADVPAKF
KSEPWARLGVNVDQNFEPLYIVSPEKKSTVTELKGLLKDVDELYLATDGDREGEAIAWHL
LETLKPRVPVKRMVFHEITEPAIRNAAENPRDLDIALVDAQETRRILDRLYGYEVSPVLW
KKVAPKLSAGRVQSVATRIIVQRERERMAFHSASYWDVTAELDASVSDPSASPPKFTAKL
NTVDGRRVATGRDFDSLGQLKRPDEVLVLDEASAGALASGLRGAQLAVTSVEQKPYTRRP
YAPFMTSTLQQEAARKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSESAINAARTQAR
QLYGEEYVHPSPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSALDTDEFRLYELIWQR
TVASQMADARGTTLSLRIGGSASSGEQVVFNASGRTITFPGFLKAYVESIDELAGGESDD
AESRLPNLTQGQRVDAADLSADGHQTSPPARYTEASLIKALEELGIGRPSTYSSIIKTIQ
DRGYVQKKGSALVPSWVAFAVVGLLEQHFGRLVDYDFTAAMEDELDEIANGQEQRTNWLN
NFYFGGEHGVEGSIARAGGLKQLVGGNLEGIDAREVNSIKVFDDSEGRPVYVRVGRNGPY
LERMVDDPDNPGEQKPQRANLKEDLTPDELTPELAEKLFATPQEGRSLGIDPETGHEIVA
KDGRFGPYVTEVLPEPEDGGDDGTAGTPAKKGKKPTGPKPRTGSLFRSMDLETVTLEDAL
KLLSLPRVVGVDPTTNEEITAQNGRYGPYLKRGTDSRSLATEDQIFTITLDEALKIYAEP
KRRGRQAASAPPLRELGNDPVSGKPMVIKDGRFGPYVTDGETNASLRKGDDVLTITDERA
SELLADRRARGPVKKKAPAKKAAKKAPAKKAAAKKA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
ttggctggcggcgaccgcggcagcggtggaacaggtaatgtccggcgactcgtgattgtc
gagtcgccgacgaaggcgcgcaagatagctggctacctcggctcgaattacgtcgtggaa
tcgtcccgcggccacatccgtgacctgccccgcaacgccgccgacgtgccggcgaagttc
aagtccgagccgtgggcgcgccttggcgtcaacgtcgaccagaacttcgagccgctctac
atcgtcagcccggagaagaagtccacggtcaccgaactcaagggcctgctcaaggacgtc
gacgagctctacctcgccactgacggtgaccgcgagggtgaggccatcgcctggcacctg
ctggagacgctcaagccgcgcgtgccggtcaagcgcatggtgttccacgagatcaccgag
cccgcgatccgcaacgccgccgagaacccgcgtgacctggacatcgcgctggtcgacgcg
caggagacccgccgcatcctcgaccgtctgtacggctacgaggtcagccccgtgctgtgg
aagaaggtcgcgccgaagctgagcgcgggccgcgtgcagtcggtggccacgcgcatcatc
gtgcagcgcgaacgcgagcgcatggcgttccacagcgcgtcctactgggatgtgaccgcc
gagctggacgcgagcgtgtccgatccgtcggcgtcgccgccgaagttcaccgccaagctc
aacacggtcgacggccgccgcgtcgcgaccggccgcgatttcgactcgctgggccagctc
aagcggcccgacgaggtgctggtgctcgacgaggcgagcgcgggcgcgctggcctcgggg
ctgcgcggcgcgcagctggcggtcacctcggtcgagcagaagccctacacccgtcggccc
tatgcgccgttcatgacgtcgacgctgcagcaggaagcggcccgcaagctgcggttctcc
tccgagcgcaccatgagcatcgcgcagcggctgtacgagaacggctacatcacctacatg
cgtaccgactcgaccacgctgtcggagtcggccatcaacgccgcgcgtacacaggcccgt
cagctctacggcgaggagtacgtgcacccgtcgccgcggcagtacacccgcaaggtcaag
aacgcacaggaggcccacgaggccatccgccccgccggcgacgtgttccagacgccgggg
cagctgcacagcgcgctggacaccgacgagttccggctctacgagctgatctggcagcgc
accgtcgcctcgcagatggccgacgcgcgcggcaccacgctgagcctgcgcatcggcggc
tcagcgagttcgggtgagcaggtggtgttcaacgcctcgggccgcaccatcacgttcccg
ggcttcctcaaggcctacgtcgaaagcatcgacgaactcgccggcggcgagtccgacgac
gccgagagccgcctgcccaacctcacgcaggggcagcgcgtcgacgcggccgatctgagc
gccgacggccaccagaccagcccgcccgcccgctacaccgaggcctcgctcatcaaggcc
ctcgaagagctgggcatcggccgtccgtcgacctacagctcgatcatcaagaccatccag
gaccgcggctacgtccagaagaagggcagcgcgctggtgccgtcctgggtcgcgttcgcc
gtcgtcggcctcctcgagcagcatttcggccggttggtggactacgacttcaccgcggcc
atggaagacgaactcgacgagatcgccaacggccaggagcaacgcaccaactggctcaac
aacttctacttcggcggtgagcacggcgtcgagggttcgatcgcgcgcgccggaggactc
aagcagctcgtcggcggcaacctcgaaggcatcgacgcgcgagaagtcaactccatcaag
gttttcgacgactccgagggtcgtccggtgtacgtccgggtggggcgcaacgggccgtac
ctggagcgcatggtcgacgatcccgacaacccgggtgagcagaaaccgcagcgcgccaac
ctcaaagaggatctgacgcccgacgagctcacccctgagctcgccgaaaagctcttcgcc
acaccgcaagagggacgctcgctgggcatcgacccggagaccggccacgagatcgtcgcc
aaggacgggcgtttcgggccgtatgtcaccgaggtgctgcccgaacccgaagacggcggg
gacgacggtacggccggcaccccggcgaagaagggcaagaagccgaccggtcccaagccg
cgcacgggatcgctcttccggtccatggacctggagaccgtgacgctcgaagacgcgctc
aagctgctgtcgctgccgcgcgtcgtgggcgtcgacccgacgaccaacgaggagatcacc
gcgcagaacggccgctacgggccatacctcaagcgcggcaccgactctcgctcgctggcc
accgaggaccagatcttcaccatcaccctcgacgaggcactcaagatctacgccgagccg
aaacgccgtggccgccaggccgcgtcggctccgccgctgcgcgaactgggcaacgacccg
gtctcgggcaagccgatggtgatcaaggacggccggttcggcccgtacgtcaccgacggt
gagaccaacgcgagcctgcgtaagggcgacgatgtgctgaccatcaccgacgagcgtgcc
tccgaactgctggccgaccgccgtgcccgtggcccggtgaagaagaaggccccggcgaag
aaggctgccaagaaggcacccgccaagaaagccgccgccaagaaggcctag
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