Marinobacter shengliensis: MAALD49_10700
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Entry
MAALD49_10700 CDS
T09258
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mshe
Marinobacter shengliensis
Brite
KEGG Orthology (KO) [BR:
mshe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mshe03009
]
MAALD49_10700 (rlmD)
Enzymes [BR:
mshe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MAALD49_10700 (rlmD)
Ribosome biogenesis [BR:
mshe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MAALD49_10700 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
TRAM
Methyltrans_SAM
Cons_hypoth95
MTS
Methyltransf_11
RrnaAD
Methyltransf_15
Methyltr_RsmB-F
Ubie_methyltran
UPF0020
Methyltransf_12
CMAS
Methyltransf_23
PrmA
MetW
FtsJ
DNA_methylase
Phage_stabilise
Motif
Other DBs
NCBI-ProteinID:
BEH13702
LinkDB
All DBs
Position
1177211..1178554
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AA seq
447 aa
AA seq
DB search
MSKRRRKVLPQEPVRCEIETLGHDGRGIARAEGKVQFVDGALPGETVMAKMVSTRSKFDE
LRTLEVLEAAPDRQQPPCDFADLCGGCSLQHMSADAQIRFKEDTLREHFAHFGGIEPQEW
VEPMRSPATLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGDRIKP
LRELLHGMVAFDRIAQVEVACGDDVAAMVFRNMDELVPEDREKLIAFGQAHDLHIYLQPK
GPDTVHRIWPESSGRDGERLSYSLDEFDLTMKYHPMDFTQVNAGINQNMVHRAVEWLDVQ
PGERVLDLFCGLGNFTLPLARKGGRVVGVEGDDAMVVRGRENAQLNGLDNVEFFGADLHG
DFTGQSWAKEGFDKILIDPPRSGAEDICKYLTAFGASRIVYVSCNPATLARDAGVMVRNG
YRLVRAGVMDMFPHTTHVESIALFERE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcgtcgccgcaaggttctgcctcaggaaccggtgcgttgtgaaattgaaacc
cttggccacgacggccggggcattgcccgggccgaaggtaaagtccagtttgtggacggt
gctctgccgggtgaaacggtgatggcaaagatggtcagcacccgaagcaagtttgatgag
ctgcgtaccctggaggttctggaagcggctccagaccgccagcaaccgccctgtgacttt
gccgacctttgtggtggctgcagccttcagcacatgagtgccgatgcgcagatccggttc
aaggaagacacgctgagggagcattttgcccattttgggggcatcgaaccccaggagtgg
gttgaacccatgcgctcacccgctacccttggctatcgtcgcaaagcccgcctgggcgtg
cgctatgtgaaagcccgggagtcggtgctggtaggattccgggaaaagcgtaacagcttt
ctaacggatattgaccgttgtgtggtgctggacccgcgtattggtgatcgcatcaagccc
ctgcgggaactgctgcatggtatggtggccttcgaccggattgcccaggtagaagtggcc
tgtggtgatgatgtggcggccatggtgttccgtaacatggacgaactggttcccgaagac
cgggaaaaactgattgcctttggccaggcccatgacttgcatatctatctgcagcccaag
ggcccggatacggtgcaccgcatctggccggaatcgtctggtcgtgatggtgagcgcctg
agctacagcctggatgagtttgatctgaccatgaagtaccatccgatggacttcactcag
gtcaatgccggtatcaatcagaatatggttcatcgtgcagtggagtggctggatgttcag
cccggtgagcgggtgctggatctgttctgtggcctgggtaactttaccctgccattggct
cgcaaaggtggccgggtggttggcgtcgaaggcgatgatgccatggtggtgcgtggccgc
gagaacgcacagctcaatggtctggataatgtggaattctttggggccgatctgcacggt
gactttaccgggcaaagctgggccaaagagggtttcgacaagattctgatcgacccgccc
cggtctggcgcggaagacatctgcaagtacctcacggcgttcggggccagcaggattgtc
tatgtttcgtgtaatccggccactctggcaagagatgccggcgttatggtgcgcaacggt
tatcgcctggtgcgcgcaggtgtgatggatatgttcccccacaccacccatgtcgaatca
attgctctttttgagcgtgaatga
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