Marinobacter shengliensis: MAALD49_18710
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Entry
MAALD49_18710 CDS
T09258
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mshe
Marinobacter shengliensis
Brite
KEGG Orthology (KO) [BR:
mshe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mshe03019
]
MAALD49_18710 (hrpA)
Enzymes [BR:
mshe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MAALD49_18710 (hrpA)
Messenger RNA biogenesis [BR:
mshe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MAALD49_18710 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
ResIII
NACHT
ABC_tran
AAA_23
DUF6162
T2SSE
SRP54
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BEH14503
LinkDB
All DBs
Position
2050767..2054699
Genome browser
AA seq
1310 aa
AA seq
DB search
MTDKTTPDNAQPTAADPQAAVKAFMSQLDVCNQQEAARIIRRVGRTKGKPGQKDLEQMAN
WLEQGLEKVRQRQALHRPASFPPGLPVSDRVDDISEAIRHHQVVIIAGETGSGKTTQIPK
ICLNHGRGVRGLIGHTQPRRIAARSVAARIAEEIGEQVGQQIGYQVRFTDNTSEASRVKV
MTDGILLAEIQHDRFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATI
EVDRFSEFFDKAPVIEVSGRTFPVDVRYRPLTGDEDDRDQGWTDGVLSAIEEIEQHERKE
KQPPGDVLVFLPGEREIRALSKVLRHAELRHTEVLPLYSRLSNQEQNRVFQAHKGRRLVL
STNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVAPG
ICFRLYDEADFLNRPEYTDPEILRTNLASVILQMATSGLGDIQNFPFLEAPDRRQVNDGY
KLLEELSAVDDKRRVSRLGRTMARLPLDPRLARMLVTAAEQGSLSEVLIVIAGLSVQDPR
ERPQDKQQAADQAHAPFNDKESDFATLLNIWNWFEEQRQEQSQNQLKRLCQKTFLSWMRM
REWRDIHRQLTLICREQKLALNKQPASYESMHKAILAGLLGHVAVKVEKREYLATRNRKV
MIFPGSKVAKSGPKWIVAAEIVETSKVFARMVAAIQPEWVEPLAGHVVKHHFFEPHWEQK
RAQVMGYEKVTLYGLDIVAKRRIPYAKVDPEECRNLFIRRALVEGDYHSKAPFIARNREM
LDTVENLEKKTRRRDLLVDDEVLVAFYDQRLPKDIVSGRHFESWWKGLSADELRKLELTE
ADVLQRPLDQGAAEQYPDYLEWEGVKYPLSYEFEPTSERDGVTLQVPLMALKQIPSRRLE
WLVPGLLREKCIALVKGLPKSLRRNFVPVPDFVDAALANIQPGNEPLALKLGDQLRRMTG
VQIDPEAWPEDELPRHLRMNLRVTGDKGKVVAESRDTDDLQAKLEGRAEAALASVTSDDD
RSRAPKEFSDWQFGNMPEVVQTEKGGMQVTVYPALEDLGKQVRSIRCLDRLTAEDTMRRG
IARLIINRFGNTLADLERKLPRFKQSALMFAPVGQAKVLLDDLLLSAVMQHFLPGTLPRD
EESFIRVFDAHRGDFIPALEQADERLYQAMAGYQKVAKQLKGKINLALAQSMADLKFQLQ
HLVYPGFLVATPSQWLERFGVYFEAALIRLEKMPREMGREREFLHTIEPLWARYATKLEQ
QKRQGVRDPELELYRWMLEEYRISFFAQQLGTAMTVSAKRLDKQWQNTRV
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaacaacgcccgataacgcccaacccacggctgctgatcctcaggcggca
gtgaaggcctttatgagccagctggatgtctgtaaccagcaggaagcggcgcgcattatc
cgcagagtgggccgaaccaagggcaagccgggccagaaagacctggaacagatggcgaac
tggttggaacaggggcttgagaaggtgcgccagcgtcaggcgctgcaccgcccagcgagt
tttccgccgggactaccggtcagtgatcgggtggacgacatcagcgaggccatccgtcat
catcaggtggtgatcatcgctggcgaaaccggctccggtaaaaccacccagattccaaaa
atctgcctgaaccatggccgtggcgttcgtgggctgattggccacactcaaccgcgccgg
attgccgcgcgcagtgtcgccgcccgtatcgccgaggagattggtgaacaggttggccag
cagatcggttaccaggtgcgctttaccgacaacacctcggaggcgtcccgggtcaaggtc
atgaccgatggcatcctgctggcggagatccagcacgaccgctttctggatcgttatgac
acgctgattatcgatgaggcccatgaacgaagcctgaatatcgatttcctgctcgggtac
ctcaagcaactgttaccgaaacggccggatctgaaagtcatcattacctctgccaccatt
gaggttgatcgcttcagcgagttcttcgataaagcaccggttattgaggtcagcggtcga
acgtttccggtggacgtccgctatcggcccctgaccggcgatgaagacgaccgtgaccag
ggctggaccgacggcgtactgtcagccattgaggagatcgaacagcacgaacgcaaggag
aagcagcccccaggagatgtgctggtgttcctgccgggtgagcgggaaatacgggcgctc
agtaaagtgctgcggcatgcggagctgcgacacaccgaagtattgccgttatattcccgg
ctcagtaaccaggagcaaaaccgcgttttccaggctcacaaaggccggcggcttgtgttg
tccaccaacgtggcggaaacctcgctgacggtacccggcattcgttatgtgatcgatacc
ggggttgcccgtatcagccgttacagcgttcgctccaagattcagcggttgccgatcgag
ccgatctcccaggccagcgccaaccagcgggcggggcgttgcgggcgggtggcgccgggt
atttgttttcggctttatgatgaagccgattttcttaaccggcccgagtataccgacccg
gaaatcctgagaaccaatctggcctcggtcatcctgcaaatggccacctcgggcctgggc
gatatccagaatttccccttcctggaagcgccggatcgccgccaggtgaacgatggctac
aagctgctggaagagctgagcgctgttgacgataaacgccgagtgagccgtctcggccgg
accatggcacgcctgccactggacccgcgcctggcacggatgctggtgacggccgctgag
cagggcagcctgagcgaagtgctgattgtgattgccggcctcagcgtccaggacccgcga
gagcggccccaggacaaacagcaggcagccgaccaggctcacgcaccgttcaacgacaag
gaatcggactttgccaccttgttgaatatctggaactggtttgaggaacagcgccaggag
caatcccagaaccagctaaagagactgtgccagaaaaccttcctgagctggatgcgaatg
cgcgagtggcgggatattcaccggcaactgacgttgatctgtcgggagcagaaactggca
ctgaacaagcagccggcaagctatgagtccatgcacaaggcgattcttgctggtttgctg
ggccacgttgcggtcaaggtagagaagcgggaatacctggccactcgaaatcggaaagtg
atgattttccccggttcaaaggtggccaagtccgggcccaagtggattgtggcggcggaa
attgtggaaaccagcaaggtattcgcccgcatggttgctgctatccagccggaatgggtt
gagccccttgcaggccatgtcgtaaagcaccactttttcgaaccccactgggagcagaaa
cgagcccaggtgatgggttacgagaaggtgactctgtatggactggatattgtcgccaag
cggcgcattccctacgccaaggtagacccggaagaatgccggaatctgttcatccggcgc
gccttggtggagggggattaccactcaaaagctccgtttattgcccgcaatcgggagatg
ctcgataccgtcgagaacctggagaagaaaacccgccgtcgtgacttgttggtggatgac
gaggtgttggtggccttctacgaccagaggctgccgaaagacattgttagcggtcgccac
tttgaaagctggtggaaaggcctgtctgccgacgaacttcgcaaactggagctgaccgag
gccgatgtcttgcagcgcccgctggaccaaggcgcagcggagcaatatccggattatctg
gagtgggaaggcgttaagtacccgctcagttacgaattcgagcccaccagcgagcgggac
ggggtaaccctgcaggtgccgttgatggcgctcaagcagattccgtcacgccggctggaa
tggctggtgccggggctgttgcgagaaaaatgcatcgccctggtgaaagggttgcccaaa
tccctgcgccgtaactttgtgccggttccggatttcgtcgatgccgccctcgccaacatt
cagcctggcaacgagccccttgccctgaaactgggggatcaactgcgccggatgaccggt
gtgcagattgatccggaagcctggccggaggacgaattgccccggcacctgcggatgaac
cttcgggtaaccggagacaaaggcaaagtggtggcagagagccgggataccgacgatttg
caggccaagctggagggtcgggcggaagcggcgctggcctcggttaccagcgacgatgat
cgttcgagagcaccgaaagaattcagtgactggcagttcggcaatatgcccgaggtggtg
cagaccgaaaaaggcggtatgcaggtaaccgtctatcccgcccttgaggacctgggcaag
caagtacggtccattcgctgcctggaccggttaaccgctgaggacaccatgcgccggggt
attgcccggctgatcatcaaccggtttggcaacaccctcgcggaccttgagcgcaagctg
ccccggttcaaacagtccgcgctgatgtttgccccggtaggacaggcgaaggtgctgctg
gacgatctgttgttgtctgcggtgatgcaacacttcctgcccggaaccctgcccagagac
gaagaaagctttatccgagtgttcgatgcccaccgcggggattttattccggcgttagag
caggccgacgaacgcctttaccaggctatggccggttaccagaaagtggccaaacagctc
aagggcaaaattaacctggcgctggcgcagagcatggcagatctgaaattccagcttcag
cacctggtctatccgggcttcctggtggccacgccatcccagtggctggaacgcttcggg
gtgtatttcgaggctgccttgattcgcctggaaaaaatgcccagggagatgggccgcgag
cgcgaattcctgcacaccattgagccactatgggcccgctacgccaccaagctggaacag
cagaaacgccaaggtgtgcgggaccctgaactggagctgtaccgctggatgctggaagaa
tatcggatctcattctttgcccaacaactgggcacggcgatgaccgtatcggccaagcga
ctcgataaacagtggcagaacacacgggtgtag
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