Marinobacter shengliensis: MAALD49_37700
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Entry
MAALD49_37700 CDS
T09258
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mshe
Marinobacter shengliensis
Pathway
mshe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mshe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MAALD49_37700 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mshe03019
]
MAALD49_37700 (vacB)
03016 Transfer RNA biogenesis [BR:
mshe03016
]
MAALD49_37700 (vacB)
Enzymes [BR:
mshe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MAALD49_37700 (vacB)
Messenger RNA biogenesis [BR:
mshe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MAALD49_37700 (vacB)
Transfer RNA biogenesis [BR:
mshe03016
]
Prokaryotic type
tRNA degradation factors
MAALD49_37700 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
IFT20
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
BEH16402
LinkDB
All DBs
Position
4147599..4149584
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AA seq
661 aa
AA seq
DB search
MLNADALNQLRQLKTDIKQNKVVFPGTVKPTNGRFGFVALDEGRDVFLPPEEMQKVLPGD
RVNVTEQEVEKGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKER
MGAEPDDFIYCQIHRHPIKDGKGQAKVLRVIGKAGQPGIERAFTLANFDLADAWPDEVQK
QADALSEESVATHTEGREDRTEQPYVTIDSPGTQDMDDALMATPNATGWTLSIAIADPTA
MIEPGSPAEEEAFNRATAIYFPGEPLPMLPDSISTRLCSLMPDVPRLALVCDLQVNNDGS
LGDYSFRQATIRSKGKLSYELVSHLIEGREDDEIKALPDEVANSLDQLHQAATALRKWRA
EHALLSQDRPEFRLRLDENKRIRVIEPSVQNEAHRLVEECMVAANRCAADFLTQQGKGLF
IQHPGLRDDRADNIRKLLESHAPHLAEHDANTAEGFKALMKHSDQPQAEVPVKAILSRQL
ARAELGFDAAPHQGMGLDAYTTFTSPLRKFSDFYVHRLIKAALWNTPIKPLNSQQLEALQ
ATQFRARQAANTLETWLKADYAKTLPEDPMEGTISRTMPSGFFVRLDSNGLEGFVSCKDL
EGKYGFDPVTLRLVHNKNGRIFQLEQRVTVSFAGVDDERRQINFKLIKAEEIAAPQASTG
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatgccgacgctctcaatcagttgcgccagctgaaaaccgatatcaagcagaac
aaggtggtcttcccgggcacggtcaagcccaccaacgggcgctttggctttgtggctctg
gatgaagggcgggatgtgttcctgccaccggaagaaatgcagaaggttctgcccggagat
cgggtgaacgtcaccgagcaggaagtggaaaaaggcaaaacccagggcgtggtggacgag
ctgctggaatcgcacctgaccaccttcgtaggccgctacctgatcaagggcaaggggcat
tttgtagcgccggaaactccgggcatcaaccgctggatcttcattccacccaaagagcgc
atgggtgccgagcccgacgactttatttactgccagatccatcgccacccgatcaaggac
ggtaaaggccaggcaaaagtcctgcgagtcatcggtaaggccggccaaccaggcattgaa
cgggcgttcaccctggccaatttcgacctggcagacgcctggccggacgaggttcagaaa
caagccgatgccctgagtgaagaatccgtcgcgacccataccgagggccgggaagaccgt
accgagcaaccctatgtgaccatcgacagcccgggcacccaggacatggacgatgccctg
atggccacgcccaacgccactggctggacgctgtccattgccattgccgacccaacggcg
atgatcgaaccgggcagtccggccgaggaagaagccttcaaccgggccaccgccatctat
ttcccgggcgagccgctgcccatgctgcctgacagcatcagtacacgactttgctcgctg
atgccggatgtaccccggctggctctggtgtgtgacctgcaggtgaataacgacggcagc
ctgggcgattacagcttccggcaggcgacaatccgctccaagggcaagctgagctacgaa
ctggtctcccacctgatcgaaggccgggaagacgacgagatcaaggctttgccagacgag
gtcgccaacagcctggaccagctgcatcaggccgccaccgccctgcgtaaatggcgcgcc
gaacacgcactgctgagccaggaccggccggaattccgcctgcgcctggacgagaataag
cgtatccgggtgattgaaccctcggtgcagaacgaagcccaccggctggtggaagaatgc
atggtggccgcaaaccgctgtgccgcggacttcctgacccagcagggcaaaggcctgttt
atccagcacccgggcctgcgggacgaccgcgccgacaacatccggaaattgctcgaaagc
catgcgccgcacctggccgagcacgacgccaacaccgccgaaggcttcaaggcgctgatg
aaacacagcgatcagccacaggccgaggtaccggtgaaagccatcctgtcccgccagctg
gcccgggcggagctgggctttgacgccgcgccccaccagggcatggggttggacgcctac
accacctttacctcgccgctgcgcaagttctcagacttttacgtgcaccggctgatcaaa
gcggcgctctggaacactccgatcaagcccctgaacagccagcaactggaagccctgcaa
gccacgcagttccgcgcccgccaggctgccaacaccctggaaacctggctcaaggccgac
tacgccaagaccctgccggaagaccccatggaaggcaccatcagccgcaccatgccctcc
ggtttcttcgtgcgcctggacagcaacgggctggaaggctttgtcagctgcaaggatctg
gaaggcaagtacggctttgatccggtcaccctgcgcctggtgcacaacaaaaacggccgc
atattccagctggagcagcgggttaccgtcagctttgccggcgtggacgacgagcgccgg
caaatcaacttcaagctgatcaaggccgaagaaatcgccgccccccaggcaagcacaggc
gactga
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