Mycobacterium shigaense: MSG_03449
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Entry
MSG_03449 CDS
T05717
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mshg
Mycobacterium shigaense
Pathway
mshg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mshg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSG_03449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mshg03019
]
MSG_03449
03009 Ribosome biogenesis [BR:
mshg03009
]
MSG_03449
Enzymes [BR:
mshg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSG_03449
Messenger RNA biogenesis [BR:
mshg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSG_03449
Ribosome biogenesis [BR:
mshg03009
]
Prokaryotic type
rRNA processing factors
MSG_03449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
EAD1
Motif
Other DBs
NCBI-ProteinID:
BAX93584
UniProt:
A0A1Z4EKT2
LinkDB
All DBs
Position
complement(3661544..3664330)
Genome browser
AA seq
928 aa
AA seq
DB search
MIDGGPTSESSQEPVQQDDLPDRLRVHSLARALGTTSKRVVDALAALDGRIRSAHSGVDY
EEAIRVRDLLSARPPEDLVNAVNVAAGNEVGGTSDASAERPHYMPLFVAPQPVEAAEASG
VDFDASGGDSDDDEEDDQVDRPASRRRRRGRRGRGRGRGEQGGSDGQGDDDSDSDRRGAA
DAEDADDEDSDDSDDGDSDDDNGSADGGNRRRRRRRRRKSGSADDNDESPSPDDPPNTVV
HERAPRGKSGSDDKGSNGSSNAEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAEFL
ARREAVERMMVVRDRVRTEPPHPGARYTQIAVLEDGIVVEHFVTSAGSASLVGNIYLGIV
QNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGSERKIEKALKPGDYVVVQVSKDPV
GHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILRDVVPSNAGVIIRTA
SEGVKEDDIRHDVTRLQERWEQIEAKAADVKGKAAGAAVALYEEPDVLVKVIRDLFNEDF
AGLVVSGDEAWNTINEYVNSVAPELVSKLTKYEPATGPDDQPGPDVFAVHRIDEQLAKAM
ERKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRD
IGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIE
AFSTSCPHCAGRGILLHADPVDSAPASGRGKSESGGRRGKRSKKSRGEEPPVAKVPTHAP
GEHPMFKAMAAGSATVTEIADGESEAEADDERAEARGPADVEDTDVEDTDVGPEDVDEDH
SDDDDDGDDDDDGDEDDEDDDLDDEDLDDDDEDLDDDDEDLDIEDEDLDVEDSDSVEDSD
DGAVNGGFGRPRRRRAAGRPAGPPIHAD
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtggcccaacttcagaatcatcacaagaacctgtccagcaggatgacctg
ccggatcggctgagagtccactcgctggcgcgggcgctgggaactaccagcaagcgcgtg
gtcgacgcgctcgccgcgctcgacgggcgcattcgaagcgcgcattccggggtggactac
gaagaagccatcagggtgcgcgacctgctctcggcccgaccgcccgaggacctggtcaac
gccgtgaacgtggcggccggcaacgaggtcgggggcacgtcggacgcttcggccgagcgg
ccgcactacatgccgttgttcgtcgcgccgcaaccggtggaggcggcagaggcgagcggg
gtcgatttcgacgcttcgggcggcgactccgacgacgacgaggaggacgaccaggtcgac
cggcccgcaagccggcggcggcgccggggccggcgggggcgcggccgcggtcgcggtgag
cagggcggatccgacgggcagggcgacgacgacagcgattcggaccggcgcggcgccgcg
gatgccgaagacgccgatgacgaggattcggacgactccgacgacggcgacagcgacgac
gacaacggctcggcggacgggggcaaccgccgccgccgcaggcggcggcgccggaagtcg
ggctcggcagacgacaacgacgagtcgccgtcgccggatgacccgccgaacaccgtcgtg
cacgagcgggcgccccgcggtaagtccgggtcggatgacaagggctccaacggctcgagc
aacgccgagatcaagggcatcgacggctcgacgcggctggaggccaagcggcagcgacgc
cgcgacgggcgcgacgccggaaggcgccgcccgcccgtattgaccgaggcggagttcctg
gcgcgccgggaagccgtcgagcggatgatggtcgtccgcgaccgggtccgcaccgaaccg
ccgcacccgggcgcgcggtacacgcagatcgcggtcctcgaggacggcatcgtcgtcgaa
cacttcgtcacgtcggccggctcggcgtccctggtgggcaacatctacctcgggatcgtg
cagaacgtgctgccctcgatggaggcggcgttcgtcgacatcggtcgcggccgcaacggt
gtgctgtacgccggcgaggtcaactgggacgccgccggattgggcggctccgagcgcaag
atcgaaaaggccctcaagcccggcgactacgtcgtcgtccaggtcagcaaggacccggtc
gggcacaagggcgcgcggctgaccacccaggtgtccttggcggggcgctatctggtctac
gtgccgggcgcctcgtcgaccgggatcagccgcaagctgcccgacaccgagcgtcagcgg
ctcaaggagatcctgcgcgatgtggtgccgtcgaatgccggcgtgatcatccgcaccgcg
tccgagggtgtcaaggaagacgacatccgccacgacgtcacccgcctgcaggagcgctgg
gaacagatcgaggctaaggccgccgatgtcaagggcaaggccgccggcgccgcagtcgcg
ttgtacgaagagcccgacgtgttggtcaaggtgattcgcgacctgttcaacgaggacttc
gccggactcgtcgtatcgggcgacgaagcctggaacaccatcaacgagtacgtgaattcg
gttgcgcccgaacttgtttcgaaactcaccaagtatgagcccgcgaccgggccggacgat
cagccggggcctgatgtattcgcggtgcaccgcatcgacgagcaactggccaaggcgatg
gagcgcaaggtgtggctgccgtcgggcgggacgctggtgatcgaccggaccgaagcgatg
acggtggtcgacgtcaacaccggcaaattcaccgggtcgggcggcaacttggagcagacg
gtcaccaagaacaacctggaggccgccgaggagatcgtccggcaactgcggctgcgtgac
atcggcggcatcgtggtcatcgacttcatcgacatggtgctcgagtccaaccgggatctg
gtgctgcgcagactgaccgaggcgttggcccgtgaccgcacccgccatcaggtatcggag
gtgacatcgctgggcctggtgcagctgacccgcaagcggctgggtaccggactcatcgag
gcgttctcgacgtcgtgcccgcactgcgccggtcgcggcatcctgctgcatgccgaccct
gtcgattcggcgccggccagtgggcgtggcaagtccgaatccggcggtcggcgcggcaag
cggtccaagaagagccggggcgaggagccgccggtggccaaggtgccgacgcacgctccc
ggcgagcatccgatgttcaaggcgatggctgcgggttcggccacggtgaccgagatcgcc
gacggtgaatccgaggcggaagccgatgacgagcgggccgaggcacggggtccggccgac
gtggaggataccgacgtcgaggacaccgacgtcggccccgaggacgtcgacgaagaccac
tcggacgacgacgatgatggcgacgacgacgatgatggcgacgaggacgacgaggacgac
gacctggacgacgaggacctcgacgatgacgacgaggacctcgacgatgacgacgaggat
ctcgacatcgaggacgaggatctggacgtcgaggattccgactccgtcgaagactccgac
gacggcgcggtcaacggcgggttcgggcgtccacgtcggcgccgcgccgccggccggccg
gccgggcccccgatccacgccgactga
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