Mycobacterium shigaense: MSG_03657
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Entry
MSG_03657 CDS
T05717
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mshg
Mycobacterium shigaense
Pathway
mshg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mshg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSG_03657 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mshg03000
]
MSG_03657 (alkA)
03400 DNA repair and recombination proteins [BR:
mshg03400
]
MSG_03657 (alkA)
Enzymes [BR:
mshg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MSG_03657 (alkA)
Transcription factors [BR:
mshg03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MSG_03657 (alkA)
DNA repair and recombination proteins [BR:
mshg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSG_03657 (alkA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
DUF6233
Motif
Other DBs
NCBI-ProteinID:
BAX93786
UniProt:
A0A1Z4ELJ2
LinkDB
All DBs
Position
3907274..3908728
Genome browser
AA seq
484 aa
AA seq
DB search
MQSKDARFDGWFVTAVLTTRIYCRPSCPVRPPFARNVRFYPTAAAAQRAGFRACKRCRPD
ATPGSPEWNVRGDVVARTMRLIADGTVDREGVGGLSAHLGYTTRQLERLLQAEVGAGPAA
LARAQRAQTARVLIETTDLPFGDIAFAAGFSSIRQFNETVRLVFESTPSSLRTRAAARAE
SDAAPPGTVCLRLPVRLPFAPEGVFGHLAAGAVPGCEEVRDGAYRRTLRLPFGHAIVALT
PAVDHVRCVLMLNDFRDLTTAIARCRRLLDLDADPEAIVDALSRDPDLAPIVAKAPGQRI
PRTVDEAELAVRAVLGQQVSTKAARTHAGRLVTAYGQRVHDPDGALTHTFPSVGELAEID
PAHLAVPKARRRTLTALVSGLAGESVVLDAGSDWGSARAQLLALPGIGPWTAEVIAMRGL
GDPDAFPASDLGLQLAAKQLGLPTRQRNLVERSARWRPWRSYATQHLWTTLEHPVNHWPP
GEVA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtccaaggacgcccggttcgacggctggttcgtcaccgcggtgctgacgacgcgg
atctactgccggcccagctgccccgtgcggccgcctttcgcacgcaacgtgcggttttac
ccgacggcagcggccgcgcaacgggcaggatttcgggcatgcaagcggtgccgtccagac
gcgacgccggggtcgccggagtggaatgtgcgcggtgacgtcgttgcacgcacgatgcgg
ctgatcgccgacggcaccgtcgaccgcgagggcgtcggcggtctgtcggcccatctcgga
tacaccacgcgtcaactggagcggctgttgcaggccgaggtcggcgccggaccggccgcg
ctggctcgcgcgcaacgggctcagaccgcccgcgtgctgatcgagaccaccgacctaccc
tttggcgatatcgccttcgccgccggcttttccagcatccggcagttcaacgagaccgtg
cgcctggtattcgagtcgacgccgtcgtcgttgcgcacccgcgcggcggcccgcgccgaa
tccgatgccgcaccgccgggaacggtgtgcctgcggctgccggttcgcctgccctttgcc
ccggaaggggtcttcggccatcttgccgccggcgccgtcccgggttgcgaggaggtccgc
gacggcgcctaccgacgcaccctgcggctccctttcggtcacgcgatcgtcgcgttgacc
cccgcggtcgaccacgtccgatgcgtgttgatgctcaacgactttcgcgacctcaccacc
gcgatcgcccgctgccggcggctgctggacctcgacgccgaccccgaggcgatcgtggac
gcgctgagccgcgaccccgacctcgcgccgattgtcgccaaggcgccgggacaacgcatt
ccccgcacggtcgacgaggccgagctcgcggtgcgcgcagtgctgggtcagcaggtgtct
accaaagccgcgcgaacccatgccggcaggctggttacggcctacgggcagcgggtgcac
gaccccgacggcgcgttgacccacaccttcccgtccgtcggcgagctcgccgagatcgac
cctgcccacctggcggtccccaaagcccggcgacggacgctaactgcgctggtctccgga
ctcgccggtgagagcgtggttctggacgccggcagcgactggggatccgcgcgtgcacaa
ttgttggccctgccgggcatcggaccgtggacggcggaggtgatcgcgatgcgcggactc
ggcgacccggatgccttccccgcgagcgaccttggtctccagctcgccgccaaacagctg
ggcctgccgacccggcaacggaatctggtggagcgcagcgcacgctggcgaccctggcgc
tcgtacgccacccaacacttgtggacgacgctcgagcatccggtcaaccattggccccca
ggggaggtcgcatga
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integrated database retrieval system
