Mycobacterium shigaense: MSG_03752
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Entry
MSG_03752 CDS
T05717
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mshg
Mycobacterium shigaense
Pathway
mshg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mshg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSG_03752 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mshg03019
]
MSG_03752 (deaD)
03009 Ribosome biogenesis [BR:
mshg03009
]
MSG_03752 (deaD)
Enzymes [BR:
mshg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSG_03752 (deaD)
Messenger RNA biogenesis [BR:
mshg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSG_03752 (deaD)
Ribosome biogenesis [BR:
mshg03009
]
Prokaryotic type
rRNA helicases
MSG_03752 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
CMS1
adh_short
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAX93878
UniProt:
A0A1Z4ELQ1
LinkDB
All DBs
Position
complement(4014247..4015977)
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AA seq
576 aa
AA seq
DB search
MTLPDSSPAAASATFAELQIPAPVMRAIADVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVSNKATQALVLAPTRELALQVAEAFSRYGAHLPQINVLPIYGGS
SYGVQLAGLRRGAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKITTKYLHDPLEVTFKAKTATAENISQRYIQVAGPRKM
DALTRVLETEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIAQAQRERTIAALRD
GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE
RHLLNAIEKATRQKLTEAELPTVEDVNAQRVAKFADSITSALGGSGIELFRRLVEDYERE
HNVPMADIAAALALQSRDGEAFLMAPEPPPQRRERFERPTERRERPDKARGTRPFSTYRI
AVGKRHKIGPGAIVGAIANEGGLHRSDFGHISIGPDFSLVELPAKLPQTTLKKLEKTRIS
GVLIDLRPERSGGKRAEAGKRAGEFKAGKPRRKHGE
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcccggacagctcgcctgcggctgcctctgcgacgtttgccgagctgcagatt
cctgcccccgtcatgcgggcgatcgccgacgtcggctacgagtcgccgacggcgattcag
gcagccacgattccggcgctgatggccggctccgacgtggtgggcctggcgcagaccggc
accggaaagacggcggcgttcgccatcccgatcctgtccaagatcgacgtcagcaacaag
gcgacccaggctctggtgctggcgcccacccgagagctggcgttgcaggtcgccgaggcg
ttcagccgctacggtgcgcacctgccgcagatcaacgtgctgccgatctacggcggctcg
tcctacggcgtgcaactggcagggctccggcggggcgcccaggtggtggtcggcacgccc
ggccgggtcatcgaccacctcgaacgcgggacgctcgacctgtcgcacgtggactacctg
gtgctcgacgaggccgacgagatgctcaccatgggcttcgccgaagaggtcgaccgcatc
ttgtccgagacgccggaatacaaacaggtggctctgttttcggcgaccatgccgccggcg
atccgcaagatcaccaccaagtacctgcacgacccgctcgaggtgacgttcaaggcgaaa
acagctacggccgagaacatttcgcagcgttacatccaggtcgcgggcccccgcaagatg
gacgcgctgacccgcgtcctggagaccgagccgttcgaggcgatgatcgtcttcgtacgc
accaagcaggcgaccgaagaagtagccgaaaagctgcgtgcgcgagggttttccgccgct
gccatcaacggcgatatcgcgcaggcgcagcgcgagcggaccatcgccgcgttgcgcgac
ggcggcatcgacatcctggtcgccaccgacgtcgcggcccggggcctggacgtcgagcgc
atctcgcacgtgctgaactacgacatcccgcacgacaccgagtcttacgtgcaccgcatc
gggcgcactggccgggcgggacgttcgggagccgcgctgctgttcgtctcgccgcgagag
cgccacctgctcaacgcgatcgagaaggcgacgcggcaaaagctcaccgaggcggaactg
cccacggtcgaagatgtgaacgcgcagcgggtggccaagttcgccgactccattaccagc
gcgctcggcggctcgggcatcgagctgttccgcagactggtcgaggactacgaacgcgag
cacaacgtcccgatggccgacatcgccgcggccctggcgctgcaatcccgcgacggcgag
gcgttcctgatggccccggagcccccgccgcagcgacgcgagcggttcgagcgcccgacc
gaacgccgggagcgtccagacaaggcaaggggtacaaggccgttcagtacctaccggatc
gccgtgggcaagcggcacaagatcggcccgggcgcgatcgtcggtgccatcgccaacgag
ggcgggctgcatcgcagcgacttcgggcacatctccatcgggccggatttctcgctggtg
gaactgcccgccaaactgccccagacgacgctgaaaaagcttgaaaaaacccgtatttcg
ggtgttctgatcgacctccgccccgagcggtcaggcggcaagcgcgccgaggccggcaaa
cgcgccggcgaattcaaggccggcaagccgcgcagaaagcacggcgaatga
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