Mycobacterium shinjukuense: MSHI_01320
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Entry
MSHI_01320 CDS
T07415
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mshj
Mycobacterium shinjukuense
Pathway
mshj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mshj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSHI_01320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mshj03400
]
MSHI_01320
Enzymes [BR:
mshj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MSHI_01320
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MSHI_01320
DNA repair and recombination proteins [BR:
mshj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSHI_01320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
DUF7577
KAP_NTPase
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
BBX72226
UniProt:
A0A7I7MJ88
LinkDB
All DBs
Position
150896..151759
Genome browser
AA seq
287 aa
AA seq
DB search
MPELPEIEALVDHLRRHAVGRTIGRVDVAALSVLKTFDPPVNALHGRTVVAAGRWGKYLG
LRADNLWLIAHLSRAGWLRWSDTLAPAPLRPGKGPIALRVHLGTPGDAPGFDLTEAGTQK
RLAVWLVDDPQRVSGIAALGPDALDVSADDLAGRLAGNTGRIKTVITDQKVIAGIGNAYS
DEILHAAKISPFATAEHLSDAQRTSLHHAMVAVLSDAVSRSVGQGAAMLKGEKRSGLRVH
ARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactccccgagatcgaagcgctggtcgaccatctgcgccggcacgccgtcggc
cggacgatcggccgcgtcgatgtcgccgccctgtcggtgctgaaaaccttcgatccgccg
gtcaacgcgctgcacggccggacagtggtggcggccggccggtgggggaaatacctcggc
ctgcgcgccgacaacctgtggttgatcgcccatctgtcgcgggcgggctggctgcgatgg
tctgacacgctggccccggcgccgctgcgccccggcaagggaccgatcgcgctgcgcgtc
catctgggcaccccgggcgacgcgcccgggtttgacctcaccgaggccggcacccagaag
cggctggccgtctggctggtcgacgacccgcagcgggtgtcgggcatcgccgccctgggg
ccggatgcgctggacgtcagcgccgacgacctggccgggcggctcgccggcaacaccggc
cggatcaaaaccgtcatcaccgaccagaaggtgatcgccggtatcggtaacgcctacagc
gacgagattctgcacgccgccaagatctcgccgttcgcgacggccgagcacctgtccgac
gcacaacgcaccagcctgcaccacgcgatggtggcggtgctgtccgacgcggtgagccgg
tccgtcggccagggggccgccatgctcaagggggagaagcgttccggactgcgggtgcac
gcacgcaccggtctgccctgcccggtgtgcggcgacaccgtgcgggaagtgtcgttcgcg
gacaagtcttttcagtactgcccgacatgccagaccggcggcaaagcgctggccgaccgg
cgcatgtcccggttgctgaagtag
DBGET
integrated database retrieval system
