Mycobacterium shinjukuense: MSHI_20370
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Entry
MSHI_20370 CDS
T07415
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mshj
Mycobacterium shinjukuense
Brite
KEGG Orthology (KO) [BR:
mshj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mshj03016
]
MSHI_20370
Enzymes [BR:
mshj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MSHI_20370
Transfer RNA biogenesis [BR:
mshj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MSHI_20370
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
Motif
Other DBs
NCBI-ProteinID:
BBX74131
UniProt:
A0A7I7MPE6
LinkDB
All DBs
Position
2257368..2258549
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AA seq
393 aa
AA seq
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MTARQIEAAAELLDRGSGPFAVDAERASGFRYSNRAYLIQIRRADAGTVLIDPVSHGGDA
LTVLRPVAEVLGADEWILHSADQDLPCLAEVGMRPSALYDTELAGRLAGFDRVNLAAMVQ
RLLGLGLAKGHGAADWSKRPLPPAWLNYAALDVELLIELRAAISEVLAAQGKTDWAAQEF
EHLRTAPPVAARPDRWRRTSGIHRVQDRRALAAVRELWTTRDLIAQRRDIAPRRILPDSA
IIDAAVKDPKSIDDLIALPVFGGRNQRRQAPTWLAALETARKTPDPPEIIEAPNGPPPPG
RWGKRKPDAAARLTAARAALAAVTHRVGVPVENLVSPDLVRRLCWDWQGGIDPVRAVDEY
LRAGQARVWQRELVVPVLAAAMTRAADAGSDER
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcccgccagatcgaggcggccgcggaactcttggaccgcggtagcgggcccttt
gcggtcgacgccgagcgggcgtcgggtttccgctattccaaccgggcctacctgatccag
atccggcgggccgacgccggcaccgtgctcatcgacccggtcagccatggcggcgacgca
ctgaccgtgctgcggccggtcgccgaagtgctcggcgcagacgaatggatcctgcactcc
gccgatcaggatctgccctgcttggccgaggtcggaatgcggccgtcggcgctgtatgac
accgagcttgccggacggctggccgggttcgaccgggtgaacctggcggccatggtccag
cggctgctgggtctgggactggccaaggggcacggcgcggccgactggtccaagcgccca
ctgccgccggcctggctcaactatgcggccctggacgtggagctgctcatcgaactgcgc
gcggcgatctcggaagtgctcgccgcgcaaggcaaaacagactgggccgcacaggaattc
gagcatctgcgaacggccccgccggtggctgcccggccggatcggtggcggcgaacctcg
ggtatccacagagtgcaagaccggcgcgccctcgccgcggtccgcgagttgtggacgacg
cgcgacctgatcgcccagcgccgcgacatcgcgccccgccgtattctgcccgactcggcc
atcatcgacgccgccgtcaaggacccgaagtccatcgacgacctcatcgcgttgccggtg
ttcggcgggcgaaaccagcgccgccaggccccgacgtggctggccgcgctggaaaccgcc
cggaaaaccccggatccgccggagatcatcgaggcgcccaacgggccgccaccaccgggg
cggtggggcaagcgcaaacccgacgccgccgcgcggctgaccgccgcccgcgcagcgctg
gccgcggtgacgcaccgggtgggggtgccggtggagaacctggtctcgccggacttggtg
cggcggctgtgctgggactggcagggcgggatcgacccggtccgcgccgtcgacgagtac
ttgcgtgccggccaggcgcgggtgtggcagcgtgaactcgtggtcccggtgctggccgcg
gcgatgacgcgggccgccgacgccggctccgacgagcgttag
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