Mycobacterium shottsii: MSHO_00680
Help
Entry
MSHO_00680 CDS
T07303
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
msho
Mycobacterium shottsii
Pathway
msho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSHO_00680 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msho03000
]
MSHO_00680 (alkA)
03400 DNA repair and recombination proteins [BR:
msho03400
]
MSHO_00680 (alkA)
Enzymes [BR:
msho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MSHO_00680 (alkA)
Transcription factors [BR:
msho03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MSHO_00680 (alkA)
DNA repair and recombination proteins [BR:
msho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSHO_00680 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HHH
Motif
Other DBs
NCBI-ProteinID:
BBX54723
UniProt:
A0A7I7L641
LinkDB
All DBs
Position
66502..67989
Genome browser
AA seq
495 aa
AA seq
DB search
MHEDFERCYRAVQSKDARFGGWFVTAVLTTRIYCRPSCPVRPPFARNVRFLPTAAAAQRE
GFRACKRCCPDASPGSPEWNVRGDIVARAMRLVADGTVDREGVTGLAASLGYTTRQLERL
LQAEVGAGPLALARAQRMQTARVLIETTDLPFGDVAFAAGFSSIRQFNDTIRLVCDSTPT
ALRRHAAARFGAPAASPGTVSLRLPVRTPFAYQGVFGHLAAGAVPGCEEVRDGAYRRTLR
LSSGNGIVTLTPAPDHVRCLLVLDDFRDLAAATARCRRLLDLDADPEAVVEALSGDPALG
PVVATAPGQRIPRTVDEAELAVRAVLAQQVSTKAARTHAARLVTAYGRPIHDQGGTLTHT
FPSVQDLAEIDPIHLAVPKTRQRTLSMMVDAIADRRVNLDAGCDWTRAREQLLDIPGVGP
WTAEVIAMRGLGDPDAFPLADLGVRLAAKQLGLPQRQPGLLERSARWRPWRSYATQHLWT
TLEHSVNDWPPREVA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgaagacttcgaacgctgctatcgggcggtccaatccaaggacgctcggtttggc
ggctggttcgtgaccgcggtgctgaccacccggatctactgccggccgagttgccccgtt
cgcccaccgttcgcccgcaacgtgcggtttcttccaacagctgcggcagctcaacgtgag
ggcttccgggcctgcaaacgttgctgccctgacgcgtcaccgggttcgccggaatggaac
gtgcgcggcgacatcgtcgcgagggcgatgcggttggttgccgacggcaccgtggaccgc
gaaggtgtcaccgggcttgccgcgagtctgggctacaccacacgccagctggaacgcctg
ctgcaggctgaggtcggcgccggtcccctcgcgctggcccgcgcccaacggatgcagacc
gcacgggtgctgatcgagaccaccgatctgcccttcggcgacgtggcgtttgcggccggg
ttctccagtatccggcagttcaatgacaccatccgcctggtttgcgacagcacaccaacg
gcgttgcgtcgacacgctgccgcgcggttcggcgcacccgccgcctcgccgggcacggta
tccctgcgcctgccggtgcgaaccccctttgcctaccagggtgtcttcggccacctcgcc
gccggggccgtgccgggttgtgaggaggtccgtgatggtgcctatcgacgcacgctgcga
ctgtcgtccggcaatggcatcgtcacgctgacacccgcgcccgaccacgtccggtgtcta
ctggtgctcgacgatttccgcgacctcgcggccgccacagccagatgccggcgcctgctc
gatcttgatgccgacccggaggctgttgtggaggccctcagtggcgaccccgctctgggc
ccggtagtagccacggcacctgggcagcgcataccccgcaccgtggacgaggcagaactc
gccgtgcgcgccgtgctcgcacaacaggtgtcgaccaaggctgcgcgtacccacgcggcc
cgcctggtcaccgcctacggccgaccgatccacgatcaaggcggaaccttgactcatacc
ttcccgtcggtgcaggacctggccgaaatcgacccgatccatctggccgtccccaagacc
cgacagcgcaccttgagcatgatggtcgacgccatcgccgaccgaagggtgaacctggac
gccggatgcgactggactcgggcgcgagagcagctgctcgatatccccggagtcggccca
tggaccgcggaagtcattgccatgcgcgggctgggcgacccggacgcgtttccgttggca
gaccttggcgtccggctcgccgcgaaacagttgggcctgccccagcgtcaaccgggtcta
ctggagcgcagtgcgcgctggcgtccctggcgttcgtatgcaacccaacacctttggacc
acactcgagcattcggtaaacgattggccaccacgggaggttgcatga
DBGET
integrated database retrieval system
