Mycobacterium shottsii: MSHO_00870
Help
Entry
MSHO_00870 CDS
T07303
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
msho
Mycobacterium shottsii
Pathway
msho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSHO_00870 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msho03021
]
MSHO_00870 (rho)
03019 Messenger RNA biogenesis [BR:
msho03019
]
MSHO_00870 (rho)
Transcription machinery [BR:
msho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MSHO_00870 (rho)
Messenger RNA biogenesis [BR:
msho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MSHO_00870 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
VWA_2
AAA_22
DUF7440
Motif
Other DBs
NCBI-ProteinID:
BBX54742
UniProt:
A0A7I7L5J5
LinkDB
All DBs
Position
complement(89075..90940)
Genome browser
AA seq
621 aa
AA seq
DB search
MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG
MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASPEAPAVDEATKDAPQQEQNASS
DAAVRRERRRSSRDSGTSSRDGADSAGESTDRRGKRAAGGDADNNQKAPEKNPEDAKTDG
GAAESGGDQGTGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDGSDSELREDD
VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ
PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLMPLYPNQRLRLETTPERLTTRVIDLIM
PIGRGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE
VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS
GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD
RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLMMSQLRKT
KNNYEFLVQVSKTTPGNMDND
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatacggacctcatcacggctggcgaaagcaccgacgctgataagaagtcggat
tccgtgacaaaagacagttccgacctcaatactgctgcgccgaccggcgcgctggccacc
atggtgctgcccgaactgcgtgcgctggccaaccaagttggtgtcaaggggacgtcgggc
atgcgtaagaacgagctgatcgccgcgatccaagaatttcgggaccgcgccaacggcacg
cccgcggccgccgagccgacctcggattccggcgaacagaagtcctcggcgagtcccgag
gccccggcggtcgacgaggccaccaaagacgctcctcaacaggagcaaaacgcctcatct
gacgccgcggtgcgccgcgagcggcgcagatcctcgcgtgactcgggaacgtcgtcacgt
gacggcgccgactcggctggcgaaagcacagatagacgagggaaacgggccgccggcggc
gatgccgacaacaatcagaaggcgccggaaaagaatccagaagacgccaagactgacggg
ggagcagcggagtcgggcggtgaccaaggcaccggccagcagggctcgggtggccagcaa
tcgcgcggcgaagacgatggcgaagggcggcagggccggcgaggacgccgattccgcgac
cgccggcgtcgtggggagcgctcgggtgacggttccgactccgagttgcgtgaggacgac
gtcgtccagccggtcgccggcattcttgacgtgctcgacaactacgcctttgtgcgtacc
tccggctaccttgccggcccgcacgacgtctacgtgtcgatgaacatggtgcgcaagaac
ggcctgcgccgcggcgacgcggtcaccggcgccgttcgggttccgcgcgaaggcgagcag
cccaaccagcggcagaaattcaacccgctggtgcggttggacagcgtcaacgggggatcg
gtcgaagacgccaagaagcggcccgaattcggcaagctgatgccgctctaccccaaccag
cgtcttcgcttggaaaccaccccagagcggctgaccacacgggtcatcgatctgatcatg
ccgattggcaggggccagcgcgcgctgatcgtctcgccccccaaggccggtaagacgacg
atcctgcaggacatcgccaacgccattaccaagaacaatccggaatgccacctcatggtc
gtgctcgtcgacgagcggcccgaggaggtcaccgacatgacgcgttcggtcaagggtgag
gtcatcgcctcaacgttcgaccgaccgccatccgaccacacgtcggtcgcggagctggcc
atcgagcgtgccaagcgcctcgtggagcagggcaaagacgtcgtggtgctgctggactcc
atcacccggttggggcgtgcctacaacaacgcgtcaccggcatcgggccggatcctgtcc
ggtggtgtcgactccaccgcgctgtacccgcccaagcgattcctgggcgcggcacgcaac
atcgaagaaggcggctcgctgaccatcatcgcgaccgcgatggtcgagactggctccacc
ggtgacaccgtcatcttcgaagagttcaagggcaccggcaacgccgagctcaagctggac
cgcaagatcgccgaacggcgcgtcttccccgcggtcgacgtaaacccgtcgggtacccgt
aaagatgagctgctgctctcacctgacgagttcgccatcgtccacaagctgcgtcgcgtg
ctgtccggcctggattcccaccaggccatcgacctgatgatgtcgcagctgcggaagacc
aagaacaactacgagttcctcgtgcaggtctccaagaccacaccaggaaatatggacaac
gactag
DBGET
integrated database retrieval system
