Mycobacterium shottsii: MSHO_31560
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Entry
MSHO_31560 CDS
T07303
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msho
Mycobacterium shottsii
Pathway
msho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSHO_31560 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msho03019
]
MSHO_31560 (rne)
03009 Ribosome biogenesis [BR:
msho03009
]
MSHO_31560 (rne)
Enzymes [BR:
msho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSHO_31560 (rne)
Messenger RNA biogenesis [BR:
msho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSHO_31560 (rne)
Ribosome biogenesis [BR:
msho03009
]
Prokaryotic type
rRNA processing factors
MSHO_31560 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
IF2_N
PCB_OB
Osmo_MPGsynth
Motif
Other DBs
NCBI-ProteinID:
BBX57811
UniProt:
A0A7I7LCR3
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All DBs
Position
3043643..3046639
Genome browser
AA seq
998 aa
AA seq
DB search
MVDGAPSSDPENEPTQREDLPDRLRVHSLARTLGTSSRRVLDALSALDGRIRSAHSSVDR
VDAVRVRDLLAEQPAEEGQAEEGQQAPDAVAAEVPDAPGEAVEPDEPESRLMLETQETVQ
VVETWVERPHYMPLFVAPQPISEPVAGDDADDESGDEGDDDEEQADRPANRRRRRGRRGR
GRGRGEQGANDGQDQTGDDGDEAPQKTGGNSTSSDDTEAQDGADSEESDNGDDDNGSADG
ANRRRRRRRRRKSGAGDDGDEGPAPDDPPNTVVHERAPRSGGKSGNSDSGDDSGGNEIKG
IDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPHPGAR
YTQIAVLEDGIVVEHFVTSAASVSLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGE
VNWDAAGLGGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASS
TGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERWNQIEAK
AVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEHVSSVAPDLV
SKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVN
TGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLT
EALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHADPVDSAPT
TGRKADSGGRRNRRSKKNRAEEPSEKEAVAKAPTHAPGEHPMFKAMAASSSSEAEHGDGE
VEESGEELTAGVDDQAAVQVALDLGETDETDETDETDDFDDDSDDSDEDDDTDETNDTDV
DADEDEDTDDDSDEDEDTEDDDELDDDLDEDDLDDDDLDEDEDELDDDDSDSDDEDGESE
LTEPAAGRPAALEFTTIAERPRRRRAAGRPAGPPIHLG
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacggtgccccatcttcagacccggaaaacgagccgacacagcgtgaggacctg
ccggaccgcctgagagttcactcactggcgcgaacgctgggaaccagtagccggagggtg
ctggatgcgttgagcgcgctcgatgggcggattcgtagcgcccattccagtgtggaccgc
gtcgatgcggtccgggtgcgcgacctgctggcggagcaacctgccgaggagggtcaggcc
gaggagggccagcaagcccccgacgccgtggccgctgaggtgcccgatgctcccggtgaa
gctgtcgagcccgacgaacccgaatcgcgcctgatgctggaaacccaggagacggtgcag
gtcgtcgagacctgggtggagcggccgcactacatgccgctgtttgtcgcaccccagccg
atttcggagcccgtcgctggcgacgatgccgatgacgagtcgggcgacgaaggtgacgat
gacgaagagcaggccgaccggccggccaaccggcgccgccgccggggtcggcgcgggcgc
ggccgcgggcgcggcgagcagggcgcaaacgacggtcaggaccaaaccggcgacgatggt
gacgaggccccgcagaagacggggggtaactccacgtcatcggacgacaccgaggcgcaa
gacggcgcggactccgaagagtcggacaacggcgacgacgacaacggttcggccgacggc
gcgaaccggcgtcggcgccggcgccgacgccgcaagtcgggtgctggtgatgacggcgac
gagggtccggccccggatgacccgcccaacacggtcgtacacgagcgtgccccccgctcc
ggcggcaagtcgggcaactcggatagcggtgacgattccggtggcaacgagatcaagggc
atagacggctcgacacggctggaagccaagcggcagcgccgccgtgacgggcgtgacgcc
ggccggcgccgcccaccggtgttgagtgaggccgaattcttggctcgtcgcgaggcggtc
gagcgggtgatggtggtgcgcgaccgggttcgcaccgagccaccccacccgggcgcgcgt
tacacccagatcgcggtgcttgaagacggcatcgtcgttgagcactttgtgacctcggct
gcttctgtctccttggtgggcaacatctacctggggatcgtgcagaacgtgctgccttcg
atggaggcggcattcgtggatatcggtcgtggccgcaacggcgtgctttacgccggtgaa
gtcaactgggacgcggcgggcctcggcggggccgaccgcaagatcgaacaggctctcaag
cccggcgactacatcgttgtgcaggtcagcaaggacccggtcggccacaagggtgcccga
ctgacgacacaggtgtcgctggccggccgctacctggtgtacgtgccgggtgcgtcatcg
accgggatcagccgcaagctgcccgacaccgaacgccagcggctcaaggaaatcctgcgt
gaggtggtgccctccgacgccggcgtgatcattcggaccgcgtccgagggtgtcaaagag
gacgacatccgtgcggacgtcacccggctgcaggagcgctggaaccagatcgaggccaag
gccgtcgagatcaaacagaaggccgccggcgccgcggtagcgctctacgaagagcccgac
gtgttggtcaaggtcatccgggatctgttcaacgaagacttcgccgggctggtcgtatcc
ggggacgacgcgtgggacaccatcaacgagcacgtgagttctgttgccccggatttggtt
tccaagctgagcaagtacgaaccggccgtcgggtcggaggggcaggtcgggccggatgtc
tttgcggtgcatcgcatcgacgagcagctggccaaggcaatggatcgcaaggtgtggctg
ccctcgggcggcaccctggtgatcgaccggaccgaagcgatgacggtggtcgacgtcaat
accggcaagttcaccggttccggcggaaacctcgagcagacggtgaccaagaacaacctg
gaggccgccgaggagatcgtgcgccagctgaggctgcgcgacatcggtggcatcgtggtg
atcgacttcatcgatatggtgctggagtccaaccgtgacctggtgctgcgccggctgacc
gaggcgttggcccgcgaccggactcgtcaccaggtgtcggaagtgacttcgctgggtctg
gtccaactgactcgcaagcggttggggaccgggctggtcgaagccttctcaacctcctgt
ccgcactgcagcggccgtgggattctgctgcatgccgacccggtggattcggcgccgaca
actggacgcaaagctgactcgggtggtcggcggaaccgccgatcgaagaagaaccgcgcc
gaagagcccagcgagaaggaggccgtggccaaggctcccacccatgccccgggcgaacac
ccgatgttcaaagccatggccgcgagttcgtcatcggaggccgagcacggcgacggggaa
gtcgaggagtccggcgaggagttgaccgccggggtcgacgaccaagccgcggttcaggtg
gcccttgatctcggcgagaccgacgagaccgacgagaccgacgagaccgacgactttgat
gatgactcggacgactccgacgaggacgacgacaccgacgagaccaacgacaccgacgtt
gacgccgatgaggacgaagacaccgacgacgactccgacgaggacgaagacaccgaagac
gacgacgaactcgacgacgacctcgacgaggacgatctcgacgacgacgacctcgacgaa
gacgaggacgagctggatgacgacgattcggatagcgacgacgaggatggtgagagcgaa
ctcacagagccggctgctggccgtcccgcagccctcgagttcaccacgattgccgagcgc
ccgcgccggcggcgtgcggccggccggccggccggtccacccatccatctgggctga
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