Methanobrevibacter smithii: Msm_0217
Help
Entry
Msm_0217 CDS
T00539
Name
(GenBank) tRNA intron endonuclease, EndA
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
msi
Methanobrevibacter smithii
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msi03016
]
Msm_0217
Enzymes [BR:
msi01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Msm_0217
Transfer RNA biogenesis [BR:
msi03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Msm_0217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Sen15
Motif
Other DBs
NCBI-ProteinID:
ABQ86422
UniProt:
A5UJP4
LinkDB
All DBs
Position
complement(203517..204032)
Genome browser
AA seq
171 aa
AA seq
DB search
MRGNLSNDIVSIKIEEGSKRPIALHEKSLFGKIEADTLNLSLIEACYLHEKGRLDVYEDE
IKCSLDYLIDLLKNKEIYGKYIVFRDLKDRGYVIKTGFKYGSDFRLYNRGGGPGKGHSDY
LVKIIYETYEIDALDFSSYVRVSHGVNKKLLLAIVDDDLDITYYNVEWTRP
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggaaatttatctaatgatattgtatctataaaaattgaagaaggtagtaaaaga
ccgatagctttacatgaaaaaagtctatttggtaaaattgaagcagatactttgaatctt
tctttaattgaagcttgttatttacatgagaaaggtcgtttggatgtttatgaagatgaa
atcaaatgcagtttggattatcttattgaccttttgaaaaataaggagatttatggaaaa
tacattgtttttcgtgatttgaaagaccgtggttatgttattaaaaccggatttaaatat
ggttcagatttccgtttgtataatcgtggaggaggtcctggaaaaggacattccgactat
cttgttaaaattatttatgaaacttatgagattgatgcactggatttctcaagttatgtt
agagtttctcatggtgttaacaagaaacttcttctggctattgtagatgacgatttggat
attacatactacaatgttgaatggacaagaccataa
DBGET
integrated database retrieval system
