KEGG   Methanobrevibacter smithii: Msm_0624
Entry
Msm_0624          CDS       T00539                                 
Name
(GenBank) transcription antiterminator, NusG
  KO
K15172  transcription elongation factor SPT5
Organism
msi  Methanobrevibacter smithii
Brite
KEGG Orthology (KO) [BR:msi00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Msm_0624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msi03021]
    Msm_0624
   03019 Messenger RNA biogenesis [BR:msi03019]
    Msm_0624
Transcription machinery [BR:msi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     Msm_0624
  RNA polymerase I system
     Msm_0624
Messenger RNA biogenesis [BR:msi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     Msm_0624
SSDB
Motif
Pfam: Spt5-NGN KOW KOW1_SPT5 KOW4_SPT5
Other DBs
NCBI-ProteinID: ABQ86829
UniProt: A5UKV1
LinkDB
Position
complement(604596..605066)
AA seq 156 aa
MEDANSSIYALKTSAGQERNVARLLAHKAISVEGIGISAILVPESLKGYILVESSTKIDL
RNPDLKVPHLRGVVEGKHGITFEEAKRFLKPEPIISSIQKGSVVELISGPFKGERAKVVR
IDESREEVVLELIEAAVPIPVTVKADQIRIIQKEAD
NT seq 471 nt   +upstreamnt  +downstreamnt
atggaagatgctaatagttccatatatgctcttaaaacctctgcaggtcaggaaagaaat
gttgctagacttttagctcataaagctatcagtgttgaaggcataggtatttctgcaatt
cttgtcccagaatctttaaaaggatatatattagtagaatcttcaacaaaaatagattta
aggaatccggatcttaaagtgcctcatttaagaggtgttgtagaaggtaaacatggaatt
acttttgaagaagctaaaagattcttgaaacctgaacctatcatttcctctatccaaaaa
ggaagtgttgttgaacttatttctggtccgtttaaaggagaaagagcaaaagtggttcgt
attgatgaatcacgtgaagaagtagttctagagttaatagaagcagcagtacctattccg
gttactgtaaaagctgatcaaattagaattattcaaaaggaggctgactga

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