Methanobrevibacter smithii: Msm_0631
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Entry
Msm_0631 CDS
T00539
Name
(GenBank) transcription initiation factor IIE, alpha subunit
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
msi
Methanobrevibacter smithii
Pathway
msi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Msm_0631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msi03021
]
Msm_0631
Transcription machinery [BR:
msi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
Msm_0631
Prokaryotic type
Archaeal type
TFE
Msm_0631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
DUF2250
Zn_Ribbon_TF
HVO_2753_ZBP
DUF7560
Zn_Ribbon_YjdM
HTH_Cmi2_C
Zn_ribbon_LysW
Zn_ribbon_8
HTH_9
DUF3232
Motif
Other DBs
NCBI-ProteinID:
ABQ86836
UniProt:
A5UKV8
LinkDB
All DBs
Position
611553..612074
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AA seq
173 aa
AA seq
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MIDDPLVKSLLTNVVEDESNLPIVQALIDGVETDEAIAEKTEIKLNIVRKILYKLYDMGL
ATYKRSKDPETQWFTYSWKFEEQEVINHIKSDSEEYLKMLNKELEKEEDTMYFVCPQGHI
RLDFETATEYDFICPECGEELEFFDNTNLIKQIKDDIKTVESNYKSFTKKVDA
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgatagacgatcccttagtaaaatccttattaaccaatgttgtggaagatgaaagcaat
ttacctattgttcaggcattaattgatggtgttgaaacagatgaggcaattgctgaaaaa
actgaaattaaattaaacatcgttagaaaaatcctttacaaactttatgatatgggattg
gctacctacaaaagaagtaaagacccggaaacacaatggtttacttattcctggaaattt
gaagaacaggaagtgattaatcatattaaaagcgattcagaagaatatctaaaaatgctt
aataaggaactggaaaaagaagaagatacaatgtattttgtatgtcctcaaggacacatc
agacttgattttgaaactgctacagaatatgatttcatttgcccggaatgtggtgaagaa
ttagaattctttgataatactaatctaattaaacagataaaagatgatattaaaactgtt
gaaagcaactacaaatctttcaccaaaaaggttgatgcttaa
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