Methanobrevibacter smithii: Msm_0642
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Entry
Msm_0642 CDS
T00539
Name
(GenBank) cell division control protein Cdc48, AAA+ ATPase family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
msi
Methanobrevibacter smithii
Pathway
msi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Msm_0642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msi03019
]
Msm_0642
03009 Ribosome biogenesis [BR:
msi03009
]
Msm_0642
04131 Membrane trafficking [BR:
msi04131
]
Msm_0642
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msi04147
]
Msm_0642
Messenger RNA biogenesis [BR:
msi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Msm_0642
Ribosome biogenesis [BR:
msi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Msm_0642
Membrane trafficking [BR:
msi04131
]
SNARE
SNARE associated proteins
Others
Msm_0642
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Msm_0642
Exosome [BR:
msi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Msm_0642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
AAA_2
RuvB_N
CDC48_2
AAA_14
AAA_33
TIP49
AAA_22
AAA_lid_PRS2_C
AAA_5
nSTAND3
AAA_28
AAA_3
NPHP3_N
RNA_helicase
Mg_chelatase
ATPase
Sigma54_activat
AAA_17
ABC_tran
AAA_24
Zeta_toxin
AAA_7
IstB_IS21
SLFN-g3_helicase
DUF815
NB-ARC
Parvo_NS1
Viral_helicase1
Bac_DnaA
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABQ86847
UniProt:
A5UKW9
LinkDB
All DBs
Position
621352..623544
Genome browser
AA seq
730 aa
AA seq
DB search
MAQNEITLKVAEALSQRDIGQGIARLDPKTMSDLGINERDLIEITGDKKTAAIALPSQTD
IGLGVIRIDGLVRKNSGATIGGEVTIKKAQVIEAKKVVLAPTENNIRVQGDVRGLFQGKA
MVQGDIIGSQIRTRPTSMGMGFDSIFSDLMDFSPMKEIKFAVVSTKPAGIVVVGPNTEVE
LHESPVDVSNIEGVTNLVDVSYEDIGGLKDEVKKVREMIEIPLKRPELFDKLGIAPPKGV
LMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEENAPSII
FIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQALRRPG
RFDREIEIGVPDSEEREEILEIHTRNMPLAEDVDLHKLASTTHGFVGADLESLCKEAAMR
VVRRIIPEIKNDEEIPEEVLKKIVVTNDDFKSALKEIQPSALREVLVQVPNVKWDDVGGL
DDVKQELKEAVEWPLKHPEKFEKFGVKPPKGTLLYGVPGTGKTLLAKAVASESEANFISI
KGPELLSKWVGESEQGVREVFRKAKQTAPTVIFFDEIDSIASTRSANDSDSGVTKRVVNQ
LLTEMDGLEELEDVAIIAATNRPDILDAGLMRPGRFDRHIKVDLPNEDARLSIFKVHTEG
MPLADDVSLEKLAKQTDGYVGADIEAVCREAAMLTLRNNLDAENVPYKYFKEALEKVKPS
NSPGDQVQYI
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaatgaaattactttaaaagtagctgaagctctttcacaaagagatatcggt
caaggaatcgcaagattagacccaaaaaccatgagcgatctcggaattaatgaaagagac
cttatcgaaattactggtgacaaaaaaacagcagcaattgccctaccttcacaaaccgac
attggtcttggagtgataagaattgacggattagttcgtaaaaactcaggagcaaccatc
ggcggagaagtaaccattaaaaaagcacaagttattgaagctaaaaaagttgttcttgca
ccaactgaaaacaacattcgtgtacaaggagatgtacgcggattattccaaggaaaagca
atggttcaaggagacattatagggtctcaaatcagaaccagaccaaccagcatgggaatg
ggatttgacagcatatttagtgatttaatggatttctcaccaatgaaagaaattaaattt
gctgtagtgtccaccaaaccggcaggaattgttgtagttggaccaaacaccgaagtggaa
ttacacgaaagtcctgtagatgtatccaacatcgaaggtgtaactaatttagttgatgta
agctatgaagatatcggcggtcttaaagatgaagttaaaaaagttagggaaatgattgaa
attcctcttaaaagaccggaactctttgacaaattaggaattgcacctccaaaaggagtg
ttaatgcacggaccaccaggtacaggaaaaacattactggctaaagcagtagccagtgaa
agtgatgctcatttcattgcaataaatgggcctgaaatcatgagtaaatatgttggcgga
tctgaagaaaacttaagggaatactttgaagaagcagaagaaaatgcaccatcaattata
ttcattgatgaattagatgctattgctccaaaaagagaagatactcaaggtgaaactgaa
agaagaactgtagctcaacttttaaccttaatggatggtcttaaatccagaggacaagtt
gttgttattggtgcaaccaacaggccggattctcttgatcaagcattaagaagacctgga
agattcgaccgtgaaattgaaattggtgttcctgattctgaagaaagggaagaaattctt
gaaatccatacaaggaacatgcctcttgcagaggatgtggacttacataaactagccagt
acaactcacggatttgtaggagcagacttggaatcattatgtaaagaagcagcaatgaga
gttgttagaagaattattccggaaatcaaaaacgatgaagaaattccagaagaagttctt
aaaaaaatcgttgttacaaacgatgactttaaatcagctttaaaagaaattcaaccttct
gcattaagagaagttcttgtacaagtacctaatgttaaatgggatgatgtaggtggactt
gacgatgttaaacaagagttaaaagaagctgttgaatggccattaaaacatcctgaaaaa
ttcgaaaaatttggagtaaaaccaccaaaaggaaccttactttacggagttccaggtaca
ggaaaaacattacttgcaaaagcagtagccagtgaaagtgaagctaacttcatctccatc
aaaggtcctgaattactatccaaatgggtaggtgaatctgaacaaggtgtaagggaagta
tttagaaaagcaaaacaaactgcacctactgtaatatttttcgatgaaatcgattcaatt
gcaagtacccgtagtgcaaatgacagcgacagcggagtaaccaaaagagtagtaaatcaa
ttattaactgaaatggacggtttagaagaactcgaagatgttgcaatcattgcagcaacc
aacagaccggacatattagatgcaggtttaatgagacctggaagatttgacagacacatc
aaagttgatttaccaaacgaagatgcaagattatctatcttcaaagtacatactgaaggt
atgccactagctgacgatgtaagtcttgaaaaattagctaaacaaactgacggatatgtc
ggagcagatattgaagcagtatgtcgtgaagcagcaatgttaactttaagaaacaacctt
gatgctgaaaatgtaccttacaaatactttaaagaagctcttgaaaaagtcaaaccatct
aacagtcctggcgatcaggttcagtatatctag
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