Methanobrevibacter smithii: Msm_0717
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Entry
Msm_0717 CDS
T00539
Name
(GenBank) DNA topoisomerase I, TopA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
msi
Methanobrevibacter smithii
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msi03032
]
Msm_0717
03400 DNA repair and recombination proteins [BR:
msi03400
]
Msm_0717
Enzymes [BR:
msi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Msm_0717
DNA replication proteins [BR:
msi03032
]
Prokaryotic type
DNA Topoisomerases
Msm_0717
DNA repair and recombination proteins [BR:
msi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Msm_0717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HVO_2753_ZBP
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ABQ86922
UniProt:
A5UL44
LinkDB
All DBs
Position
complement(686051..688201)
Genome browser
AA seq
716 aa
AA seq
DB search
MNEVIICEKPKSAEKIAKALSSKAKKNVFNKKVKYWTLERDGKDITVLSAVGHLYSLTPD
NPKDKVYFDLHWAPLFEIDKKYKNYTKDYVRAIKKYAKDADSYIHACDYDIEGTLIGYHA
LKYGCGDDALKKSSRMKFSTLTKKDIVEAYENRIPIDRHQVDSGVARHILDFYFGVNISK
ALMKSVSAAKKRFLKLSAGRVQTPTLSILVDREKEIKKFVPKPYWLIKALLDGEIEADHV
DGKIFDKTRAEEIFSNCENSDAAVDKIKYSNSTTKPPVPFNLGGLQSEAYNVFGFSPKKT
QTIAQSLYTAGYTSYPRTSSQKLPESLDFKSIFLQLSKNSEFRTHISALPAKLKPNEGKK
EDAAHPAIHPTGILPDKLDKDELKIYELIVYRFISVFFEAATFETMSTTLDIGGEKFKFR
RRRVTHKGWLEHYPFKKIDNEEFPDVKEGDSIIVKEIVSEEKETKPPARYNQASLIKELE
KRELGTKATRADIIDKLYDRKYITGNKIEVNQLGENIIDTLSEYCSNLTSEELTRDFENK
LEGIDNDKATRESVVAEGEKEVKVILGDIDKNKVKIGSQIYDAYQESNIVGKCKCGGNLV
KKYSPKNKSTFVGCSNYPDCKATYSVPKGANFLKKTCKTCGLPIISFGKPRQHACLDPNC
GKENTKPREMKVVGVCPSCGKELIKRSGRYGEFVGCRGFPKCRFTCSLDELKDKVQ
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtaataatttgcgaaaaaccaaaatctgcagaaaaaatagctaaagcattg
tcttctaaagctaaaaagaacgtatttaataaaaaagttaaatattggacattggaaaga
gacggtaaggatataacagtattgtctgctgtcggacacttatattctttaactccggat
aatcccaaggataaagtctattttgatttgcattgggcaccattatttgagattgacaaa
aaatataagaactataccaaggattatgtaagggctattaaaaaatatgctaaagatgct
gacagctacattcatgcatgcgattatgatattgaaggaactttaatcggatatcatgca
ttaaaatatgggtgtggcgatgatgctttaaaaaaatcttcaagaatgaagttttccact
ttaactaaaaaggatattgtggaagcatatgaaaatagaatacctattgacagacatcag
gtagacagcggtgtagccagacatattctggacttttattttggtgtaaacatatcaaag
gctttaatgaaatctgtaagcgcagccaaaaaaagatttttaaagttatctgcaggaaga
gttcaaactccgactttgtctattttggttgaccgtgaaaaagagattaaaaaatttgta
cctaaaccttactggttaattaaagctttacttgacggtgaaattgaagcggatcatgta
gatggaaaaatattcgataaaacaagggctgaagagattttttcaaactgtgaaaatagt
gatgcagctgtcgataaaatcaaatattccaattccactacaaaacctcctgttccattt
aatttaggtggtttgcagtctgaagcttataatgtctttggtttttcacctaaaaaaact
cagactattgctcaaagcctttatactgcaggatatacatcttatccacgtacttcatcc
caaaagttgcctgaaagcctggatttcaaaagcatatttttacagctgtccaaaaattcc
gaattcagaacacatatttcagctcttccggctaaattaaaacctaatgaaggtaaaaag
gaagatgctgctcaccctgctattcatccgacaggtattttacctgataaattggacaag
gatgagttaaaaatttatgaactgattgtttacaggtttatttcagtatttttcgaagca
gctacctttgaaacaatgagtaccactttggacattggcggtgaaaaattcaagtttaga
cgcagaagggttacccataaaggatggctggaacactatccatttaagaaaatagataat
gaggaatttcctgatgttaaggaaggagattccatcatcgtcaaggagattgtatcagaa
gaaaaagaaaccaaacctcctgcaagatataatcaggcttctttaattaaggaacttgaa
aaaagagaacttggaaccaaagctacccgtgcagatattattgataagttatatgacaga
aaatatataactggaaacaaaattgaggttaatcagcttggtgagaacataatcgacact
ttaagcgagtactgttctaacttaacaagtgaagagctgacccgtgactttgaaaataaa
cttgaaggcatagacaatgataaagccacccgtgaaagtgttgtagctgaaggtgaaaag
gaagttaaggttattttgggagatattgataaaaacaaagttaaaatcggttcacagatt
tatgatgcctatcaggaaagcaatattgttggaaaatgtaaatgcggcggaaatctggtt
aaaaaatactctcctaaaaataaaagcacttttgtgggatgttctaattatcctgactgt
aaagcaacttactctgttcctaaaggagcaaatttcttaaagaaaacctgtaaaacatgt
ggattacctattatttcctttggtaagccacgtcagcatgcatgtcttgaccctaactgt
ggtaaagagaatactaagcctcgtgagatgaaagtagttggtgtgtgtcctagttgtggt
aaagaactgattaaaaggtccggaaggtatggagaatttgttggttgcagaggatttcca
aaatgtcgctttacctgttctttagatgagttaaaagataaagtccaatag
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