KEGG   Methanobrevibacter smithii: Msm_0725
Entry
Msm_0725          CDS       T00539                                 
Name
(GenBank) DNA repair flap structure-specific 5'-3' endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
msi  Methanobrevibacter smithii
Pathway
msi03030  DNA replication
msi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:msi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Msm_0725
   03410 Base excision repair
    Msm_0725
   03450 Non-homologous end-joining
    Msm_0725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msi03032]
    Msm_0725
   03400 DNA repair and recombination proteins [BR:msi03400]
    Msm_0725
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:msi04147]
    Msm_0725
DNA replication proteins [BR:msi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Msm_0725
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Msm_0725
DNA repair and recombination proteins [BR:msi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Msm_0725
Exosome [BR:msi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Msm_0725
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5 HHH_2 Ribosomal_S13
Other DBs
NCBI-ProteinID: ABQ86930
UniProt: A5UL52
LinkDB
Position
694533..695516
AA seq 327 aa
MGVKLKDIIQPEQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSHLSG
ILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEARKY
AMRSSKLSPYIIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFG
AKRVVRNLAINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTAL
KLAKKGELENKLAKLQEESSHDISEVREIFLNHNVNTNYKIRWKKPAKNDIIDFLCEEHG
FSQDRVSKACDKLKNLNSSQKSLEDWF
NT seq 984 nt   +upstreamnt  +downstreamnt
atgggtgttaaactaaaagacataatccagccggaacagattgattttaaagatttgaaa
ggaagagcaatctctatagatgcatttaataccctttaccagttcctgtctacaatcaga
caaagagacggaagacccttaagtgacagcaatggaaatataacctctcatttaagcgga
attttatatagaaactcctcaatgattgaaaaagacataaaaccgatttatgtatttgac
ggaacaccatcctatcttaaacaggaaaccattgaccaaagaagacagacaagagaagaa
tctgaaaaaaaatggaaagaagcactggctaaacaggatactcaggaagccagaaaatat
gcaatgagatcttccaaattatctccatacattatagaatcctccaaaaagctgctgaca
atgatgggaataccatacattgaagcatatggtgaaggagaagcacaagcagcttacctt
gttgaaaatggagatgcatgggcagtagcttcacaggattatgactgtctcttattcgga
gccaaaagggttgtaagaaaccttgccatcaattccaacttgggagatctggaatattac
aatttaaaaagagttttagatgaactggacataaatagagaacagcttattgatatggga
atactaatcggaactgattttagtgaaggcttaaaaggagtaggtgcaaaaacagctctt
aaactagctaaaaaaggagaacttgaaaataaattagccaaacttcaggaagaatcatca
catgacatctctgaagtcagagaaatattcctaaaccataatgtaaataccaattataaa
atcagatggaaaaaaccggctaaaaatgatattattgactttttatgtgaagaacacggt
ttttcacaggacagagtttcaaaagcctgtgataaattaaaaaatttaaattcaagtcag
aaaagccttgaagactggttctaa

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