Methanobrevibacter smithii: Msm_0909
Help
Entry
Msm_0909 CDS
T00539
Name
(GenBank) DNA-dependent RNA polymerase, subunit A', RpoA
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Msm_0909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msi03021
]
Msm_0909
Enzymes [BR:
msi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Msm_0909
Transcription machinery [BR:
msi03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Msm_0909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
DUF7351
DUF2543
Motif
Other DBs
NCBI-ProteinID:
ABQ87114
UniProt:
A5ULN6
LinkDB
All DBs
Position
complement(871621..874305)
Genome browser
AA seq
894 aa
AA seq
DB search
MKGFIKKIKQINFGLMSPEDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVIDPSLKC
RSCGYRGGECQGHFGSIELARPVIHVGFGDIIHKILRSTCNECGRVLLTDDEIFKYTEKI
KDAQNHHENLTKILKEIYNEARRDVCPHCEAAQDDITIDKPVSIVQKMEGEDYKLTASEV
RERLERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERSEDDLTHKLV
DILRINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQ
RLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDE
MRTYIENGPNVHPGANYVIRTDGRKIRVYDETKDMILEKLEPGYIIERHLKDGDMVLFNR
QPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTDESRAEAKSLMR
VQEHILSPRFGGPIIGAIHDHISGAYLLTKPGSEFSEEQALQIIRKSHLFNNENVDPKHL
KRKHKNWTGKELFSLLLPDDLNLVYKAEICQKCDVCKEEACDIDAYVVIEDGELKHGVID
EKAYGSFSGRILDKIVKEYGPARAREFLDRSTDLAICGIMKTGITTSTNDEEIPEEAQER
INEHLRESENKVDKLVEAYENDYLEALPGRSLEETLEMKIMQVLGEARDVSGQIAENYLT
MEHNHSVVMARTGARASMLNLTQITSCVGQQSVRGGRIHRGYIDRTLPHFRKNELGAKAK
GFVHSSYKKGLDPIEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLQVKPSGLVT
DNQGMVIQLMFGEDGVDPAKSDFGKAADLNKIIDENRLGDANPNYDSSVEQEGK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggatttataaaaaaaatcaaacaaattaactttgggcttatgtctcctgaggat
attcgtgaaatgtcagtagttaaaattgaaactcctgatacttacgatgaggatggttat
cctattgaaaatggtttaatggatcctcatttaggggttattgatccaagtttaaaatgt
aggtcttgtggttacagaggtggagagtgtcaaggacacttcggtagtattgagttggcc
agacctgttattcatgttggttttggtgatataattcacaaaattttacgttcaacatgt
aatgaatgtggtcgtgttttattaactgatgatgaaatcttcaaatacactgaaaagatt
aaagatgctcaaaatcatcatgaaaatttaactaagattttaaaagagatttataatgaa
gctcgtcgtgatgtttgtcctcactgtgaagcagctcaggatgatattactattgataag
ccggtttccattgttcaaaaaatggaaggtgaagattataaattaactgctagtgaagtt
cgtgaaaggcttgaaaggatttctgatgaagatgcttttgttttaggtgttaatcctgaa
gtagctaggccagaatggttagtgttaactgttttacctgttcctccagttactgtaagg
ccttctattactttagatactggtgaaaggtctgaagatgatttaactcacaaacttgtt
gatattttacgtattaatcaaagactaattgaaaacatggaagcaggtgctcctcaactt
attgttgaagatttatgggagttattgcaataccatgtaactacttacttcgataatgaa
gctagtggtgttcctcctgcaagacaccggtctggaagacctttaaaaactttagctcaa
aggttaaaaggtaaagaaggtagattcagaagtaatttgtctggtaaaagggttaatttc
tctgcccgtactgtaatttcaccagatccaaacattagtattaatgaagttggtgttcct
gaaatgattgcaaaagaggttactgtacctgcttatgtaaatgactggaacatggatgaa
atgagaacatatattgaaaacggtcctaatgttcatcctggagccaactatgttataaga
actgacggaaggaaaatcagggtttatgatgaaactaaagacatgattttagagaagtta
gaacctggttatattattgaaagacacctgaaagatggtgatatggttttattcaaccgt
cagccttctcttcacagaatgtctatgatggctcatgaggtaagagttttaccttataag
actttccgtcttaatttatgtgtatgtcctccttacaatgcagatttcgatggggacgaa
atgaacatgcacgttttccaaactgatgagtcccgtgctgaggctaagtctttaatgcgt
gtacaggaacatattttatctccaaggtttggtggacctattattggtgctattcacgac
cacatttccggagcatatcttttaacaaaaccaggatctgaatttagcgaagaacaggca
ctgcagataatcagaaaatcacatttgttcaataatgaaaatgttgatcctaaacactta
aaacgtaaacataaaaactggactggtaaagagttattctctttattactgcctgatgat
ttgaatcttgtttataaagctgagatttgtcagaaatgtgatgtctgtaaagaagaagct
tgtgacattgatgcttatgttgtaattgaagacggtgaacttaaacatggtgtcattgat
gaaaaagcttacggttctttctcaggacgtattttagataaaatcgttaaagagtatggc
cctgctagagccagagaattcttagacaggtctactgatttagctatctgcggaattatg
aaaacaggaatcaccacaagtacaaatgatgaagaaattcctgaagaagctcaggaaaga
attaatgagcatttaagagaatctgaaaataaggtagataaattagttgaagcatatgaa
aacgattatcttgaagctttacccggtagaagccttgaagaaactttagaaatgaagatt
atgcaagtgcttggggaagctagggacgtatctggtcaaattgcagaaaactaccttact
atggaacacaaccattctgtagttatggcacgtactggtgctagggcatctatgttgaac
cttactcagattacttcctgtgtaggacagcaatctgttcgtggtggtcgtatccacagg
ggttatattgacaggactttacctcatttccgtaaaaatgagttaggtgcaaaggcaaaa
ggatttgtacattcaagttataaaaaaggtttggatccaattgaattcttcttccacgct
atgggaggaagagaaggtcttgtagatacagcgattcgtacagcacaatccggttatatg
caaagaagactggtaaatgcgcttcaggatttacaggttaaaccgtcaggacttgttact
gataatcagggaatggttatccaacttatgtttggtgaagatggagtagatccagctaaa
agtgactttggtaaagcagctgacttaaataaaatcattgatgaaaataggttaggagat
gctaatccaaactatgattcaagtgttgaacaagagggtaaatag
DBGET
integrated database retrieval system
