Methanobrevibacter smithii: Msm_0910
Help
Entry
Msm_0910 CDS
T00539
Name
(GenBank) DNA-dependent RNA polymerase, subunit B', RpoB
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Msm_0910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msi03021
]
Msm_0910
Enzymes [BR:
msi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Msm_0910
Transcription machinery [BR:
msi03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Msm_0910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
DUF5817
Auto_anti-p27
Zf_2nd_IFT121
Zn_ribbon_13
Motif
Other DBs
NCBI-ProteinID:
ABQ87115
UniProt:
A5ULN7
LinkDB
All DBs
Position
complement(874332..876143)
Genome browser
AA seq
603 aa
AA seq
DB search
MDSAKIYINGELLGYCKDPESFTNEMREKRRNGEVSHEMNITYYDKNNEIYIFNDPGRAR
RPLIIVKDGKPVLSDKHLEKVAKGELKWDDLIDNGFIEYLDAEEEENSYIAMSIADLNEE
HTHLEIDPATMLGICAGIIPFSDHNSSPRNTMEAGMTKQALGLYVSNYALRTDTRAHLLH
HPQTPIVKTRIIDSTNYDKRPSGQNFVVALMSYEGYNMEDAMVINKGSLERGLARSSFFR
AYDTAEKRYPGGQEDKFEVPDKNIKGYRSEDAYRHLDDDGVVNPESYVESGDVLIGKTSP
PRFLEEIDEFGTVAEKRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVRDTRQPEFG
DKFASRHGQKGVLGLILSPEDVPFTESGVVPDLIVNPHAIPSRMSVGQVLEMVAGKAGCL
EGERVDGTPFNTELEKEIKQQLKNHGFESAGCESLYNGVTGERIEAEIFVGVAYYQKLHH
MTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALTLKERLLDESDK
YEAIVCENCGMLAVYDKNKNKKYCPICGDVETYPIEISYAFKLLLDELKSLCIFPKLVLG
DKT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgctaaaatttatattaatggagaacttttaggatattgtaaagaccctgaa
agtttcaccaatgaaatgagagaaaaaaggagaaatggtgaggtttctcatgaaatgaat
attacttattatgataaaaataatgagatttatatattcaatgacccaggtagggcaaga
agaccattaatcattgttaaagatggtaaaccagttcttagtgataaacatttagaaaaa
gtagctaaaggcgaattaaaatgggatgatttaatagacaatggttttattgaatacttg
gatgctgaagaggaagaaaactcctatattgctatgagtattgctgatttaaatgaggaa
catactcatttggaaattgacccggctactatgcttggaatttgtgcaggtattattccg
ttttccgatcacaattcttcaccaaggaatactatggaagcaggtatgacaaaacaagca
ttaggattatatgtttctaactatgcattacgtacagatacaagggctcacttattacac
cacccgcaaactcctattgtaaaaacacgtattattgattcaactaattatgacaaaaga
ccatcaggtcagaactttgttgtagctcttatgtcttacgaaggatataacatggaagat
gcaatggttattaacaaaggttctcttgaaagaggattggctaggtcttcatttttcaga
gcttatgatactgctgaaaaaaggtatcctggtggacaagaggataaatttgaggttcct
gataaaaacattaaaggttaccgttccgaagatgcttataggcacttagatgatgacggt
gttgttaacccggaatcatatgttgaatctggtgatgtattaatcggtaaaacttcacca
ccaagattcttggaagaaatcgacgaattcggaactgtagctgaaaaaagaagggaaact
tctgtaacagtaagacacggtgaaaaaggtatcgttgatgctgttcttttaactgaaact
gttgaaggaagcagattggctaaaattagagtaagagataccaggcaacctgaatttggg
gataaatttgcatcaaggcacggtcagaaaggggttcttggtttaatattatctcctgaa
gatgttcctttcacagaatctggtgttgttcctgatttaattgttaaccctcacgctatt
ccttccaggatgtctgtaggacaagtgcttgaaatggtagcaggtaaagcaggctgtctt
gaaggtgaacgtgttgacggaactccattcaatacagaacttgaaaaagaaatcaaacaa
cagcttaaaaatcacggatttgaatctgcaggttgcgaatcattatataatggtgtaacc
ggagaaagaatcgaagctgaaatatttgttggtgtggcatattaccaaaaattacaccac
atgactactgataaagtttatgctcgttcaagaggtcctgtacaagttcttacccgtcag
cctactgaaggaagagctcgtgaaggtggtttaaggtttggagaaatggaaagagattgt
cttattgcacacggtgcagctcttaccttaaaagaaagacttttagatgagtctgacaaa
tatgaagctattgtctgtgaaaattgtggtatgttagcagtatatgataagaataaaaat
aaaaagtactgtccaatttgtggagatgttgaaacttatccgatagaaatttcatacgca
tttaaattattattagatgaacttaagagtttatgtattttccctaaattagttttagga
gacaaaacataa
DBGET
integrated database retrieval system
