Methanobrevibacter smithii: Msm_1059
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Entry
Msm_1059 CDS
T00539
Name
(GenBank) predicted RecB family exonuclease
KO
K07464
CRISPR-associated exonuclease Cas4 [EC:
3.1.12.1
]
Organism
msi
Methanobrevibacter smithii
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
msi02048
]
Msm_1059
Enzymes [BR:
msi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.12 Exodeoxyribonucleases producing 3'-phosphomonoesters
3.1.12.1 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming)
Msm_1059
Prokaryotic defense system [BR:
msi02048
]
CRISPR-Cas system
Type I CRISPR-Cas system
Subtype I-A factors
Msm_1059
Subtype I-B factors
Msm_1059
Subtype I-C factors
Msm_1059
Subtype I-D factors
Msm_1059
Type II CRISPR-Cas system
Subtype II-B factors
Msm_1059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cas_Cas4
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ABQ87264
UniProt:
A5UM36
LinkDB
All DBs
Position
1019149..1019943
Genome browser
AA seq
264 aa
AA seq
DB search
MINISSIKMYMYCPMKLYLKTHVDISQNDEYQLYNEIKNLKIDIQDLLQKNMRKLNKTMN
LNEIETALGQNIAAYTENNIDTIKNLKLGITQEQTDEIVDETYFNIKILALKAKKAMNIL
DKDGMEIVEMFFPNCMYSYLMKDKHLDLVGICDKIEIIDGKYYPISFKSSKPPLKGTWDG
DAIELAANAILIEEEFDTEVFVGFVKYSKIDDKRPVIMDMNLRKGLFSVLNEVKEIIINK
KIPKVKINEKKCRNCEYYAICTKD
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgataaatatatcatctataaaaatgtatatgtactgcccaatgaaattatatctaaaa
acacatgttgatatttctcaaaatgacgaatatcaattatataatgaaattaaaaatctc
aaaatagatattcaggatttattgcagaaaaatatgcgcaaactaaataaaactatgaat
ttaaatgaaatagaaactgctttaggtcaaaatatagctgcatacaccgaaaataatatc
gacaccataaagaatttgaaattaggaattacacaagagcagacagacgaaatagtagat
gaaacttattttaacataaaaatattggctctcaaagccaaaaaggccatgaatattctg
gacaaggacggaatggaaattgtcgaaatgttttttccaaattgtatgtattcataccta
atgaaagacaaacaccttgatttagtaggaatatgtgacaaaatagaaattattgatgga
aaatattatccgataagttttaaaagttcaaaaccaccacttaaaggaacatgggacggt
gatgcaatagaactagctgcaaatgccatcttaattgaagaagaatttgacaccgaagtt
tttgtaggatttgtaaaatattcaaaaatagacgataaacgaccggtaattatggatatg
aatcttagaaaaggactgtttagtgtattgaatgaagttaaagaaatcataattaataaa
aaaattccaaaagtaaaaataaatgaaaaaaagtgtagaaactgcgaatattatgcaatt
tgtacaaaagattaa
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