Methanobrevibacter smithii: Msm_1156
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Entry
Msm_1156 CDS
T00539
Name
(GenBank) tRNA pseudouridine synthase D, TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
msi
Methanobrevibacter smithii
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msi03016
]
Msm_1156
Enzymes [BR:
msi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Msm_1156
Transfer RNA biogenesis [BR:
msi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Msm_1156
Prokaryotic type
Msm_1156
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ABQ87361
UniProt:
A5UMD3
LinkDB
All DBs
Position
complement(1134937..1136199)
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AA seq
420 aa
AA seq
DB search
MLNANTYVTNEKGIGGTIRNQYEDFYVEEIPEMTPTGEGPNIWIWIEKVGRTTLDVVLDI
ARDLHISRKRMGFAGMKDKKARTRQWICISNMESEEQFRQVKDLEGTIYKTDFLKVVRGR
KKLRMGQLKGNKFQILIRDIDDIEKSAEIANNILKELEVTGVPNYFGWQRFGKPRTNTHL
VGEALVQNDLKEAVRRYIGNPTSEEHEENQKARQAYDDGNLEESLELMSKGMRYEKMMVR
ELIKYAKKGPLDDKAYKNALHALPKPLQRMFVHAYQSYLFNDAVSRRVAMGINRYVEGDI
IIDNEERIVRDKTPEEFQNLIDNFEANPTSPLYGTKVPFAGGEVGEMEKSVLNSYNLTKE
DFEVPKMPRLGSHGLRRSMRIQVWDASAIPTDEGVLTEFSINKGSYATAVLREVMKKDVV
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatgctaatacttatgtaactaatgagaaagggattggcggaactattagaaat
cagtatgaagatttttatgttgaagaaatccctgaaatgactccaactggtgaagggcct
aatatttggatttggattgagaaagtaggtaggactactttagatgttgttttggatatt
gcaagagatttacatattagtagaaaaagaatgggctttgcaggaatgaaagataaaaaa
gcccgtacccgtcagtggatttgcatatctaatatggaatctgaagaacagttcaggcaa
gttaaggatttggaaggaaccatttataaaactgattttttaaaggttgttcgtggacgt
aaaaaacttaggatgggacagctaaagggaaataaattccaaattcttattcgggatatt
gatgatattgaaaaaagtgctgaaatagctaataacattttaaaggaattggaagttact
ggtgttcctaattactttggctggcaaagatttggtaagccaagaacaaacactcacttg
gtaggtgaagctttagttcaaaatgatttaaaagaagctgttagaagatacattggaaat
cctacaagtgaagaacatgaagaaaaccaaaaagcaagacaagcttatgatgatggaaat
ttggaagaatctttggaattgatgagtaaaggaatgcgttatgagaaaatgatggttcgt
gaactgattaaatatgctaaaaaaggaccattagatgataaagcttataaaaatgccttg
catgcacttccaaaacctctccaaaggatgtttgtccatgcatatcaatcttatttattt
aatgatgcagttagcagaagggtagctatgggaattaacagatatgttgaaggagacatt
atcattgacaatgaagagagaatagttcgtgataaaactcctgaagagttccaaaactta
attgataattttgaagctaatcctacttctccattatatggaactaaagtaccttttgcc
ggtggtgaagttggtgaaatggaaaaatcagttttaaatagctataatttaactaaagaa
gactttgaagttcctaaaatgcctcgtttaggaagtcatggtttaagaaggtctatgaga
attcaagtttgggatgcttcagctattccaacagatgaaggtgttttaactgaattttca
ataaataaaggttcttatgctacagctgttttaagggaagtcatgaaaaaagatgttgtt
tag
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