Methanobrevibacter smithii: Msm_1193
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Entry
Msm_1193 CDS
T00539
Name
(GenBank) single-stranded DNA-specific exonuclease, DHH family
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03410
Base excision repair
msi03430
Mismatch repair
msi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Msm_1193
03430 Mismatch repair
Msm_1193
03440 Homologous recombination
Msm_1193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msi03400
]
Msm_1193
DNA repair and recombination proteins [BR:
msi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Msm_1193
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Msm_1193
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Msm_1193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
ABQ87398
UniProt:
A5UMH0
LinkDB
All DBs
Position
complement(1191650..1192984)
Genome browser
AA seq
444 aa
AA seq
DB search
MLNRASEASNVLKKHIENNNVIRIISHNDADGISAAAVLANALKEENVQFHTTIVPRLKE
DLINQLRHEKHDLVIFSDMGSSFVGELNSFKCDVIIADHHQVSDVEAESNVVHINPHLFD
IDGSRDLSGAGSSYLAVRDLDKKHLAYFALIGAFGDMQGQDGFTGVNKLIVDDAKQSGNL
EIHDGLKIVSKSSEPLFKSLAYTFSPPLPGITGDLEGSTEFLEKMNLSYGIKFTDLGEEE
KDILKDELIKINPDIFGDCYTVPKEIPLLRDLEEYSYILDACGKNKKFGLGLSIALGERE
KALKTATDLQRKYRDQLVKGLEWIKREGSVNLSNIQYLYSEDKVLKSVMGTIASIGLSIN
LLDDSKPVLGLSRLHKDIKVSGRTTRQQVEKGVNLGKALQDSSNNFGGQGGGHDIAAGAM
IPFDSKDNFLNLVNDMVEYQINND
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaatagagctagtgaagctagtaatgtgcttaagaagcatatagaaaacaataac
gttataagaattatttctcataatgatgctgatggaatttcagcggcagctgtattagct
aatgctttaaaagaagaaaatgttcagtttcatactacgattgttcctcgtcttaaggaa
gatttaataaatcagttaaggcatgaaaaacatgatttggtcattttttcagatatggga
agttcttttgtaggggaactcaattcttttaaatgtgatgttattatagctgatcatcat
caggttagtgatgttgaagcagaaagcaatgtggttcacataaatcctcatttatttgac
attgatggaagcagggatttaagtggggctggttccagctatttggcagttagggatctt
gataaaaaacatttagcttattttgctttaattggtgcttttggtgatatgcaaggtcaa
gatggatttactggagttaataaacttattgttgatgatgctaaacaaagtggtaatttg
gaaattcatgatggtttgaaaatagtttctaaatcatctgaaccactttttaaatcttta
gcttacactttttctcctccgcttccaggaataactggggatttggaaggttcaactgag
tttttagaaaagatgaatttgtcttatggaattaaattcactgatttaggtgaagaggaa
aaagatattcttaaagatgaacttattaaaatcaatccggatatcttcggggattgttac
acagttccaaaagaaatacctttgcttcgtgatttggaagagtattcatatattcttgat
gcatgcggtaaaaataagaagtttggattaggtttaagcatagctcttggagaacgtgaa
aaagccttaaaaacagctactgatttgcaacgcaaataccgtgatcaacttgttaaagga
ttggaatggattaaaagggaaggttcagttaatctttctaatattcaatatttatacagt
gaggataaagtgttgaaatctgtaatgggtacaatagctagtataggtttgtctattaac
ttgttggatgattcaaaacctgttttaggattatctagacttcataaggatattaaagtt
tctggaagaacaaccagacaacaagttgaaaaaggagttaatttgggaaaagccttacag
gatagctccaacaatttcggtggtcagggtggaggtcatgatattgctgcaggggctatg
attccatttgatagtaaggataactttttaaacttagttaatgatatggttgaatatcaa
ataaataatgattaa
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