Methanobrevibacter smithii: Msm_1332
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Entry
Msm_1332 CDS
T00539
Name
(GenBank) ssDNA-binding protein
KO
K07466
replication factor A1
Organism
msi
Methanobrevibacter smithii
Pathway
msi03030
DNA replication
msi03420
Nucleotide excision repair
msi03430
Mismatch repair
msi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Msm_1332
03420 Nucleotide excision repair
Msm_1332
03430 Mismatch repair
Msm_1332
03440 Homologous recombination
Msm_1332
03460 Fanconi anemia pathway
Msm_1332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msi03000
]
Msm_1332
03032 DNA replication proteins [BR:
msi03032
]
Msm_1332
03400 DNA repair and recombination proteins [BR:
msi03400
]
Msm_1332
Transcription factors [BR:
msi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
Msm_1332
DNA replication proteins [BR:
msi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
Msm_1332
DNA repair and recombination proteins [BR:
msi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
Msm_1332
MMR (mismatch excision repair)
Msm_1332
DSBR (double strand breaks repair)
HR (homologous recombination)
Msm_1332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
OB_MEIOB_N
Rep_fac-A_C
tRNA_anti_2
Zn_Ribbon_TF
SHLD2_OB1
DUF7575
Zn_ribbon_3
POTRA_3
RADX
Chordopox_RPO7
zf-dskA_traR
Zn_ribbon_6
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
ABQ87537
UniProt:
A5UMV9
LinkDB
All DBs
Position
1352723..1355104
Genome browser
AA seq
793 aa
AA seq
DB search
MDNEILELYEQVKDKLTIEEFQAKINDISKENEDLGFVDDYYAAEQVVNNIIGASEDDQK
SNGEILNIGDLEQGPQAAIVGRIMGISNPKSFKTRKGKSGQVCNMELKDSTGDIRVVLWT
ENIKLLKNFKEGNIVKITDVDIKEGFRGDNEANLRPRSTITHFKEADLSKFPEYEEKITD
IEDLVPETKANIIARIVRIPTPRTYEKNGKEGKVTSLELKDATGEISYTLWNKNVDLIDE
LGLDAGDSVKILGAQVRERNGELSLTHWDGRIIKGDFDVPEFTQEFIKIGDITEQNNIAI
KGVISKLQDIRTFTRKSDGSEGKLRNFDVSDDTGSIRTTIWGNDTDILLTKGDIVKIIGA
DARFDDYTDSGYSLNTNFNTQLSINPENLSAEELDIFDEIKQKVSQIKRLSEVEEFDEDG
IEVDVIGRMFAIGEINEFQRDDGSVGYARSAKFSDGEGRVGLTFWDQKAKQEYKTGGAYK
IENAKVRLGMYEVELNIGGSARIMELPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDE
GIIVTGRIIESSDVREFDRTDGSKGYVKSLEIADNSGSINVTLWNENAKKEWNVGDAIKF
QDPQISFRNDSLEINVSRSTSILEPDESEIDDLPTYDELKESIYVPKTIEALEDDDRNVR
ITGTLKEVFGNKILITKCPSCGNTVDQSSDDFVCSFCGEPIDEPRYLLMVPARLEDDTGE
ISITFFDNLAEELLDMKKEEIINLTDNGSDLGPMEGRIDDLNGLTVEVITNVSFDDYNEE
IRLNPKRILSKYY
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaaattttagaattatatgaacaggtcaaagataaattgactatagaagaa
tttcaagcaaaaataaatgatatttctaaagaaaacgaagatttaggttttgttgatgat
tattatgctgctgaacaggtggtaaacaatataattggagctagtgaagatgatcaaaaa
tccaatggtgaaattttaaacataggtgatttggaacagggaccccaagcagctattgtt
ggaaggattatgggtatctcaaatccgaaatcttttaaaacacgtaaaggcaaatctgga
caagtctgcaatatggaattgaaggatagcactggtgatattagggtagtgttatggaca
gaaaatattaaacttcttaaaaattttaaagaaggaaacattgttaaaattactgatgtt
gatataaaagaaggttttagaggagataatgaagctaatttaagacctaggtcaactata
actcattttaaagaagcggatttatcaaaattccccgaatatgaggaaaagataactgat
attgaagatcttgtccctgaaactaaagcaaatattattgccagaatagtaaggattcca
actccaagaacttatgaaaaaaatggaaaagaaggaaaagtcacttctcttgagctaaag
gatgcaactggagaaatatcctacacattatggaataaaaatgttgatttgattgatgaa
ttgggtttggatgcaggagattctgtaaaaatattaggtgcacaagtaagagaaaggaac
ggtgaattatcattaactcattgggatggcagaataatcaaaggagattttgatgttcct
gaattcactcaggaatttattaaaattggagatattacagaacaaaataatatagctatt
aaaggagtaatttctaaattgcaggatatcagaacgtttacaagaaaatctgatgggtct
gaaggtaaattaagaaactttgatgttagtgatgatacaggttctattagaactacaata
tggggaaatgatacagatattttgttaactaaaggagatattgtcaaaattattggtgca
gatgctcgttttgatgattatacagacagtggatattcacttaacacaaatttcaacact
caactttcaataaatccggaaaacttatctgctgaagaattggacatctttgatgaaatc
aaacagaaagtttctcaaattaaaagacttagtgaagttgaagaatttgatgaagacgga
attgaagttgatgttataggaagaatgtttgctattggtgaaataaatgaattccaaaga
gatgacggtagtgtgggatatgcacgttcagccaaattctctgatggtgaaggacgtgtt
ggcctaacattttgggatcagaaagctaaacaggaatacaaaaccggcggagcatacaaa
atcgaaaatgcaaaagttagattgggaatgtatgaagttgaattgaatattggaggttct
gcacgtataatggaattacctgaagacagtgaccaagcaagattccttccatcctttaaa
actattgaaacaatgctttatagccacaaatcaatagctgatgttgaagaagatgatgag
ggcattattgttacaggcagaataattgaatcaagtgatgttcgtgaatttgatagaact
gacggaagtaagggatatgtcaaatctttagaaatagctgataattcaggttctattaat
gttactttatggaatgaaaatgctaaaaaagaatggaatgttggagatgctattaaattc
caagatcctcaaatctcatttagaaacgatagcttggaaattaatgtatcaaggtccact
tctattcttgaacctgatgaatcagaaattgatgatttaccaacttatgatgaattaaaa
gaatccatttatgttcctaaaaccattgaagctctagaggacgatgataggaatgttcgt
ataacaggtactcttaaagaggtattcggtaataagatattaattacaaaatgtcctagc
tgtggaaatactgtagatcagtcatcagatgattttgtttgtagtttctgcggagagcct
atcgatgaacctagatatcttttaatggttccggctagacttgaagatgacactggtgaa
atttcaatcactttctttgataatttggctgaagaacttcttgacatgaaaaaagaagaa
ataattaatcttactgataatggttctgatttaggacctatggaaggtagaatagatgat
ttgaatggtttaactgttgaagttattactaatgttagttttgacgattataatgaagaa
attaggctcaatcctaagagaattttatccaaatattattaa
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