KEGG   Methanobrevibacter smithii: Msm_1357
Entry
Msm_1357          CDS       T00539                                 
Name
(GenBank) predicted RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
msi  Methanobrevibacter smithii
Pathway
msi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Msm_1357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msi03019]
    Msm_1357
Messenger RNA biogenesis [BR:msi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Msm_1357
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Msm_1357
SSDB
Motif
Pfam: ECR1_N EXOSC1 RRP4_S1 CsrA zf-UDP DmmA-like_C
Other DBs
NCBI-ProteinID: ABQ87562
UniProt: A5UMY4
LinkDB
Position
complement(1380307..1380879)
AA seq 190 aa
MSIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQP
ALLKLGDTVYGQITDIKTQRANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAF
RIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDYMNTTQKENEVQCRTCKKKEK
REVSINYVNS
NT seq 573 nt   +upstreamnt  +downstreamnt
atgagtataaaaaacggggcatttgtaatgcctggagataaactaggaataattgagcaa
tatttacttggaaaaggtacttatgaagataacggcgagattaaatcatcagtattagga
aatgttcaaattgattcaaaaatgaggactattactgtaaaagccaaatctagccaacct
gctcttttaaaattaggtgatactgtttacggacagattacagatataaaaactcaaaga
gctaatgtaaatattgattgtttaacagatagtagtagacctttagcacttccatacatg
ggtgcaattcacatatcccaagcaaaatcaggatatttagataaattgacagatgctttt
agaattggagatattgtaaaagcaaaagtagtaaaaattactggagataatgttgattta
gctacagtggatgaagattgtggagttttaaaagcaatgtgtacccgttgcagagattat
atgaataccacacaaaaagaaaatgaagtccagtgtagaacatgtaagaaaaaagaaaaa
cgtgaagtttctataaattatgttaatagctaa

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