Methanobrevibacter smithii: Msm_1357
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Entry
Msm_1357 CDS
T00539
Name
(GenBank) predicted RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
msi
Methanobrevibacter smithii
Pathway
msi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msm_1357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msi03019
]
Msm_1357
Messenger RNA biogenesis [BR:
msi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Msm_1357
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Msm_1357
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
RRP4_S1
CsrA
zf-UDP
DmmA-like_C
Motif
Other DBs
NCBI-ProteinID:
ABQ87562
UniProt:
A5UMY4
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All DBs
Position
complement(1380307..1380879)
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AA seq
190 aa
AA seq
DB search
MSIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQP
ALLKLGDTVYGQITDIKTQRANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAF
RIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDYMNTTQKENEVQCRTCKKKEK
REVSINYVNS
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgagtataaaaaacggggcatttgtaatgcctggagataaactaggaataattgagcaa
tatttacttggaaaaggtacttatgaagataacggcgagattaaatcatcagtattagga
aatgttcaaattgattcaaaaatgaggactattactgtaaaagccaaatctagccaacct
gctcttttaaaattaggtgatactgtttacggacagattacagatataaaaactcaaaga
gctaatgtaaatattgattgtttaacagatagtagtagacctttagcacttccatacatg
ggtgcaattcacatatcccaagcaaaatcaggatatttagataaattgacagatgctttt
agaattggagatattgtaaaagcaaaagtagtaaaaattactggagataatgttgattta
gctacagtggatgaagattgtggagttttaaaagcaatgtgtacccgttgcagagattat
atgaataccacacaaaaagaaaatgaagtccagtgtagaacatgtaagaaaaaagaaaaa
cgtgaagtttctataaattatgttaatagctaa
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