Methanobrevibacter smithii: Msm_1442
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Entry
Msm_1442 CDS
T00539
Name
(GenBank) predicted RNA hydrolase, metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msm_1442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msi03019
]
Msm_1442
Messenger RNA biogenesis [BR:
msi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Msm_1442
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ABQ87647
UniProt:
A5UN69
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Position
1464910..1466274
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AA seq
454 aa
AA seq
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MSVEVIAIGGYEEVGKNMTAVKIGEDVIIFDMGIHLDRINIHEDTDIDRMHSLDLIERGI
IPDDTLMKDVDGKVKGIIFSHGHLDHIGAVAKLAHRYDAPLIGTPYTTALVEKQIKGERK
FKVNNPIRPLNPGSKMKLSKNITLEFVQSTHSIPQAVFPVLHTPEGIIVYALDFKFDNHQ
KVSPPPDYKRLRELGRKGVLTLIVETTNAKNTEEVKTYSERIARNILEDVMHGPLYEKKG
MIVTTFASHIERVQAIADIAKKSHREIYFLGRSMERFCGIAQKQGILKLPKNASIYGSPK
AVNKALMRADEDREKYLLVTTGHQGEPDALLPRIASNRTPFNIKEGDNVIISAPIIPNPT
NAANRHIMESKLRSKGARIYSNAHVSGHAGREDHREFLRMLKPQHIIPAHGDLSMLAAYG
ELAEEEGYRIGYNVHILRNSQAQVFENERAHGGN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaagtaatcgcaattggcggatatgaagaagtcgggaagaacatgactgct
gtcaagattggcgaagatgttatcatttttgatatgggaatacacttggacaggatcaat
attcacgaagatactgatattgataggatgcacagtctagatttaattgaaaggggaatt
attccggatgacactttaatgaaagatgttgacggtaaagtaaaaggaataatcttctct
cacggtcacttggaccatattggtgcagtagctaaattggctcacagatatgatgctcca
ttaattggaactccatatacaactgcacttgttgaaaaacaaattaaaggggaacgtaaa
tttaaagtaaataatccaatcagacctttaaaccccggaagtaaaatgaagctgtctaaa
aatattactttggaatttgttcaatcaacacacagtattccgcaagcagtttttccggtt
ttacatactcctgaaggaattattgtttatgcacttgattttaaatttgataatcatcaa
aaagtatctccaccacctgattataaaagattaagggaattaggtaggaaaggagttctt
actcttattgtagaaactactaatgcaaaaaatacagaggaagttaaaacttattctgaa
agaattgcaagaaatattttggaagatgtaatgcacggaccgttatatgagaaaaaaggt
atgattgttactacttttgcttctcatattgaaagggttcaggctattgcagacattgct
aaaaaaagccacagggaaatttatttccttggaagatccatggaaaggttctgtggcatt
gcacaaaaacagggtattttaaaattacctaaaaatgcaagtatttatggaagcccaaaa
gcagttaataaagctttaatgagagctgatgaagacagagaaaaatatttgcttgtaact
actggacaccaaggggaaccagatgcattgcttcctagaatagccagtaacagaactcca
ttcaatattaaagagggagataatgttattatttctgcaccgattattccaaatccaaca
aatgctgctaacaggcatattatggaaagtaaattaaggtcaaaaggtgcaagaatttat
tcaaatgcccatgtttcagggcatgctggaagagaagaccacagggaattcttacgtatg
ttaaaaccacagcatattattccggctcacggagatttatcaatgcttgctgcttacgga
gaattagctgaagaggaaggttacagaattggttataatgttcatatattaagaaattca
caagcacaagtttttgaaaatgaacgtgcacatggaggaaattag
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