Methanobrevibacter smithii: Msm_1498
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Entry
Msm_1498 CDS
T00539
Name
(GenBank) helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msm_1498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msi03019
]
Msm_1498
03009 Ribosome biogenesis [BR:
msi03009
]
Msm_1498
Enzymes [BR:
msi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Msm_1498
Messenger RNA biogenesis [BR:
msi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Msm_1498
Ribosome biogenesis [BR:
msi03009
]
Prokaryotic type
rRNA helicases
Msm_1498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABQ87703
UniProt:
A5UNC5
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All DBs
Position
1524380..1525669
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AA seq
429 aa
AA seq
DB search
MSDITFDDFEILAEIKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTV
PLLQKIFIPDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVL
NKGVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQ
TLLFSATMPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFETKEKDKLENLTRLIDV
YDVNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIAT
DVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYAFTFVAGKEIYSLRTIKK
VTKSKIKQRKIPSYKEMESIKNTQLMNSVKNSIEKDNLEKYVKLVEGAMEEDFDSVDIAA
ALLKMVKEN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataacatttgatgattttgaaattttagcagaaattaaaaaatcaataaaa
gaaatgggttttgaagagccaagtccaatacaagaattaactattcctgaggctcttaaa
ggaattgatataataggacaagcacaaacaggtactggaaagaccctggcatttactgtt
cctttgcttcaaaagatttttattcctgataattctccccaggctattgttttatgccct
acaagggagttatgtattcaggtagctggtgaaattggtaaaataggttcacacatgaaa
aaacttaaaattttgccggtttatggtggtcagcctattggaagacaaattagagtatta
aataaaggtgttcatgtagttatcggaactccaggtcgtgttttggatcatattgaacgt
aaaactttagacttaaaaggaatttcaactgtagtattggatgaagcagatgaaatgttg
gatatgggtttcagagaggatattgaaaaaatattaagacacactccaaagcaaaggcaa
acactgcttttctcagctacaatgcctaaggaaattaaaagaattactaaattctatcag
aaaaagcctaaacatttaaaggtagctcaaagccagatgactgttccggaaataactcag
tactattttgaaacaaaggaaaaagacaaacttgaaaatttaactcgtttgattgatgtt
tatgatgttaatttaggtttggtattttgtaacactaaaaaaagagttgactgggttgct
aaaaacttgagaaacagaggatatgcagctgagggaattcatggagacatgaatcagaaa
tcccgtgataaggttatgaacaaattccgtaacggaaatattgaaattctgatagctact
gatgttgctgcacgtggaatcgatgtacctaatgttgaagtggttgttaactatgatgtt
cctcaaaatcctgaatactatgttcatagaatcggaaggacaggcagggcaggtaatatg
gggtatgcatttacctttgttgcaggtaaagaaatctatagtttaagaaccattaaaaaa
gtaaccaaatccaaaatcaaacaaagaaaaattccgtcatataaggaaatggaatctatt
aaaaatactcagctaatgaacagcgttaaaaactctattgaaaaggataatttggaaaaa
tacgtaaaattagttgaaggagctatggaagaagattttgattctgtagacatagctgct
gcattattaaaaatggttaaggaaaattaa
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