Methanobrevibacter smithii: Msm_1500
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Entry
Msm_1500 CDS
T00539
Name
(GenBank) ssDNA exonuclease, RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03410
Base excision repair
msi03430
Mismatch repair
msi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Msm_1500
03430 Mismatch repair
Msm_1500
03440 Homologous recombination
Msm_1500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msi03400
]
Msm_1500
DNA repair and recombination proteins [BR:
msi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Msm_1500
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Msm_1500
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Msm_1500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH_CID
DHH
Phage_YunG-like
Motif
Other DBs
NCBI-ProteinID:
ABQ87705
UniProt:
A5UNC7
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All DBs
Position
complement(1526530..1527951)
Genome browser
AA seq
473 aa
AA seq
DB search
MMEIPCGMQEQFLEAKELIESSNDIKIYTHTDCDGICSGAILSIILDRLNKDYEIEFVNL
DEIEDLDLDHKLTIFSDLGSGQGVDKNAKDDQKILILDHHPPLRDINYKNDKAYTYLEIN
PMFYGIDGSYYVCGGGLCYFLAKTFGFKDLSWIGVLSAIGDMQNNKTGHFEGLNEIIQED
AINEGLLKVTKNDLNIYGRSTRPLYVALSYFSDVKLPITNNQQEAKVVLEELGVDEKHNR
KTLSEVTEEDKMEIKKFLSRMISKRVPPKYLKYVPKLIVGDAYTFLNEEEGSFLRDGSEF
STAMNACGRNRKEAIGVDIIKGDRLVALDALEEVSKTHKYNLATSISKVADNYHSEIIEL
DNFQYFDCSDFDEDIASNIIGTITGRVLGYCNWKKPILGFSKPKNNQIKVSLRCSKLLAY
DGIHFGNMMREIAKEVGGTGGGHAIACGAYIPNEKKSEFLDKFNRKLQGKIAN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaataccatgcggaatgcaggagcagtttcttgaagccaaagagttaattgaa
tccagcaatgacattaaaatttatacacacactgactgcgacggaatctgctccggtgca
atcctatctataatattggaccgtttaaacaaggattatgaaattgaatttgtcaatctt
gatgaaatagaagacctagatttagaccataaactgacaattttttcagatttgggttca
ggtcagggagttgacaaaaatgcaaaagacgaccagaaaatcttaattttagaccaccac
ccgccattaagagacatcaactataaaaatgacaaagcatatacttatttagaaatcaat
ccaatgttctacggtattgacggatcatattatgtctgcggtggaggattatgttatttt
ttagctaaaacatttggctttaaggatttaagctggatcggtgttctgtcagctatcgga
gatatgcaaaacaataaaacaggacatttcgaaggattaaatgaaattatccaggaagat
gcaattaatgaaggtcttctaaaagtgactaaaaatgatttgaacatctacggacgcagt
accagaccgctatatgttgcactatcctatttcagtgatgtcaagttaccgataactaac
aatcagcaggaagctaaagttgttttggaagaattgggagttgatgaaaaacacaacaga
aaaacattatctgaggtaactgaagaggataaaatggaaatcaaaaaatttttaagcaga
atgatttccaaaagagttcctccaaaatacctcaaatatgttccaaaattgattgtggga
gatgcatacacttttttaaatgaagaggaaggaagctttttaagagacggttctgagttt
tcaacagctatgaatgcctgcggcagaaaccgaaaagaagctattggagtagatattatt
aaaggagaccgacttgttgctcttgatgccttagaagaagtcagcaaaacacacaagtat
aatctggccacttccatcagcaaagttgcagacaattatcattccgaaattattgaactt
gacaattttcaatattttgactgcagtgactttgatgaagacatagcttccaatatcatc
ggtacaataacaggtagggttttaggttactgtaattggaaaaaacctattttaggattt
agcaaacctaaaaataaccaaatcaaagtctcacttagatgctccaaactccttgcctat
gacggaattcatttcggtaacatgatgcgtgaaatcgcaaaagaagttggaggtaccgga
ggaggccatgcaatagcttgcggtgcttacattccaaatgaaaaaaaatcagaattcctt
gataaatttaatagaaaattacaaggaaaaatagcaaattaa
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