Mesoterricola silvestris: METEAL_25370
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Entry
METEAL_25370 CDS
T09355
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msil
Mesoterricola silvestris
Pathway
msil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METEAL_25370 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msil03019
]
METEAL_25370 (rnj)
Messenger RNA biogenesis [BR:
msil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
METEAL_25370 (rnj)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF7066
Motif
Other DBs
NCBI-ProteinID:
BDU73363
UniProt:
A0AA48GZR0
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Position
complement(2976618..2978384)
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AA seq
588 aa
AA seq
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MDFASPPFIDWQNPPAKDELRLIPIGGLGEFGMNALVVHTAKSLFLVDCGQLFPSEDQPG
IDSIIPDFAYLEPFAERIDAVLLTHGHEDHLGALPYFLERWPVPVYGTAFTMGLLEGKLR
EHELWSPRHMHVVEDFAKVKVGRGEIQAEWIPVTHSIPDACAIALHTPWGVVVHTGDYKL
DPSPVDGRLTGTARLTELGDQGVAVLLSDSTNILNTKPTPSEEECRGGLRDAFRATKGKL
FTATFSSNIHRIQIFLDLAYEEGRKVCLLGRSMERNVTVARSLKRLALPDDLFIEPKEVP
LFPPKKVAVLCTGSQGEEMAALQRILKGEVKGLKMVDGDRLLLSSRAIPGNEVSISRTLD
TAARLGAETTLEGIGVVHATGHGHRPDSAAMISMVRPRHMVPVHGTYRNLKVHAQLAASM
GYDKEHILFLDGGECLRLFKDGRVQEAGSVPVGKCFVDQGVDHMVDARVIHDRLILQEDG
IVIATLVVDPDTGDLAAEPSILTRGFVVLNDDQAYSELLRLTVRNAFDEAPREIRKDRDL
LVEFLRQSLRRTIRKTTQTRPVVVPMILETGGGEAPPPPAPAPRKRKR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgcctcaccccccttcatcgactggcagaacccccccgccaaggacgagctg
cggctcatccccatcggcggcctgggggaattcggcatgaacgccctggtggtccacacc
gccaagagcctcttcctggtggactgcggccagctgtttccctccgaggaccagcccggc
atcgacagcatcatccccgacttcgcctaccttgagcccttcgccgagcgcatcgacgcg
gtgctgctcacccacggccacgaggaccacctgggcgcgctgccctacttcctggagcgc
tggccggtgcccgtgtacggcaccgccttcaccatgggcctcctggagggcaagctccgg
gagcacgagctctggagcccccggcacatgcacgtggtggaggacttcgccaaggtgaag
gtgggccgcggcgagatccaggcggagtggatccccgtcacccacagcatccccgacgcc
tgcgccatcgccctccacaccccctggggcgtggtggtccacaccggcgactacaagctg
gacccctcccccgtggacgggcgcctcacgggcaccgcgcggctcacggagctgggcgac
cagggcgtggcggtgctgctctcggactccaccaacatcctcaacacgaagcccacgccc
agcgaggaggaatgccgcggcggcctgcgggacgccttccgcgccaccaagggcaagctc
ttcacggccaccttcagctccaacatccaccgcatccagatattcctggacctggcctac
gaggagggccgcaaggtgtgcctcctggggcgctccatggagcgcaacgtcaccgtggcc
cggagcctcaagcgcctggccctgcccgacgacctcttcatcgagcccaaggaggtgccc
ctcttcccccccaagaaggtggcggtgctgtgcaccggctcccagggcgaggagatggcc
gccctccagcgcatcctcaagggcgaggtcaagggcctcaagatggtggacggggacagg
ctgctgctcagctcccgggccatcccgggcaacgaggtgagcatctcccgcaccctggac
accgcggcgcgcctgggggccgagaccaccctggagggcatcggcgtggtccatgccacc
ggccacggccaccgcccggattccgccgcgatgatctccatggtgcgcccgcgccacatg
gtgcccgtgcacggcacctaccggaacctcaaggtccacgcgcagctggccgcgtccatg
ggctacgacaaggagcacatcctcttcctggacggcggcgaatgcctgcggctgttcaag
gacgggcgggtccaggaggccggcagcgtccccgtgggcaagtgcttcgtggaccagggc
gtggaccacatggtggacgcccgggtcatccacgaccgcctcatcctccaggaggacggc
atcgtcatcgccaccctcgtggtggaccccgacaccggggatctggccgccgagccctcc
atcctcacccgggggttcgtggtgctcaacgacgaccaggcctactcggaactgctccgg
ctcaccgtgcgcaacgccttcgacgaggccccccgggagatccgcaaggaccgggacctg
ctggtggagttcctgcgccagtcgctgcggcgcaccatccgcaagaccacccagacccgg
cccgtggtggtgcccatgatcctcgagaccggcgggggcgaggctccgcctcccccggcc
ccggcgccccgcaagcgcaagcgctga
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