Mycobacterium simiae: MSIM_05000
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Entry
MSIM_05000 CDS
T07396
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
msim
Mycobacterium simiae
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MSIM_05000 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msim03021
]
MSIM_05000 (sigA)
Transcription machinery [BR:
msim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MSIM_05000 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Nop14
Motif
Other DBs
NCBI-ProteinID:
BBX39049
LinkDB
All DBs
Position
542983..544518
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AA seq
511 aa
AA seq
DB search
MAATKTSPATEEPVKRTATKAPAKRPAAKAANGTAPAKRTTKSAGRTTKSDDLDAGDDGI
EAGAAKKARTAAKASSGRGTKAAGKGKDDENLDTVDDGIAEDLDGEPDLEGEPGEDLDID
TDLVLDDLEDEDVAADDADLEAGDEDTDDAEEGAVAAKPAAAKAPADDDEEIAEPSEKDK
ASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGL
YATQLMAELAERGDKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAF
LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN
KLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGD
FIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYG
VTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcgactaagaccagcccggcaaccgaagagccggtgaagcgcaccgccacgaaa
gctcccgccaagcggccggcggcaaaagccgccaacggcaccgcaccagcgaagcgcacc
acgaagtcggcaggccggaccaccaagtccgatgacctcgacgccggcgacgacggcatc
gaggccggcgccgcgaagaaggcccggaccgccgccaaggcatcctccggccgcggtacc
aaggccgccggtaagggcaaggacgacgagaatctagacaccgtcgacgacggcatcgcc
gaggacttggacggcgagcccgatctcgaaggtgagcccggtgaggatctcgacatcgac
actgacctcgttctcgacgacctcgaagacgaagacgtcgccgccgacgacgccgacctc
gaagcgggcgacgaggacaccgacgacgccgaggaaggcgccgttgcggcgaagccagcg
gcggccaaggcgcccgctgatgacgacgaggagatcgccgagccgtccgaaaaggacaaa
gcatccggcgatttcgtgtgggacgaagacgaatccgaagcgctgcgccaggcccgcaag
gatgccgaactcaccgcgtcggcggactcggttcgcgcgtacctcaagcagatcggcaag
gtggcactgctcaacgccgaggaagaggtcgagctggccaagcggatcgaggccggcctg
tacgccacccaactgatggccgagctggccgagcgcggggacaagctacccgcggcccag
cggcgcgacatgatgtggatctgccgcgacggcgaccgggccaaaaaccatctgctggag
gccaacctgcggctggtggtgtcgctggccaagcgctacaccggtcgcggcatggccttc
ctggacctgatccaggaagggaacctgggcctgatccgtgcggtcgagaagttcgactac
accaagggctacaagttctccacctatgccacgtggtggattcgtcaggcgatcacccgc
gcgatggccgaccaagcgcgcaccatccggatcccggtgcacatggtcgaggtgatcaac
aagctgggccgcattcagcgcgagctgctgcaggatctgggccgcgagcccacccctgag
gagctggccaaggaaatggacatcacgccggagaaggtgctggagatccagcagtacgcc
cgcgagccgatctcgctggaccagaccatcggcgatgagggcgacagccagctcggtgac
ttcatcgaggattccgaggccgtggtggcggtggatgccgtgtccttcacgttgctgcag
gaccagctgcagtcggtgctcgagacgctctcggagcgcgaagccggcgtggtacggctg
cgcttcggcctcaccgacggccagcctcgcaccctcgacgagatcggccaggtgtacggc
gtgacccgggaacgcatccgacagatcgagtccaagacgatgtcgaagttgcgccacccc
agccgctctcaggtactgcgcgactacctggactag
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