Mycobacterium simiae: MSIM_05890
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Entry
MSIM_05890 CDS
T07396
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
msim
Mycobacterium simiae
Pathway
msim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSIM_05890 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msim03019
]
MSIM_05890 (pnp)
03016 Transfer RNA biogenesis [BR:
msim03016
]
MSIM_05890 (pnp)
Enzymes [BR:
msim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MSIM_05890 (pnp)
Messenger RNA biogenesis [BR:
msim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MSIM_05890 (pnp)
Transfer RNA biogenesis [BR:
msim03016
]
Prokaryotic type
tRNA degradation factors
MSIM_05890 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
S1_RRP5
KH_5
Motif
Other DBs
NCBI-ProteinID:
BBX39138
LinkDB
All DBs
Position
complement(634270..636519)
Genome browser
AA seq
749 aa
AA seq
DB search
MFESTATIDNGSFGTRTIRFETGRLALQAAGSVAAYLDDENMLLSATTASKSPKEHFDFF
PLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTV
LSLDPNDLYDVLAINAASASTQLSGLPFSGPIGGVRVALIDGTWVAFPTVEQLDRAVFDM
VVAGRKVGEGDNKDVAIMMVEAEATENVIELVEGGAQAPTETVVAEGLEAAKPFIAALCT
AQEELAGAAAKPTGEYPTFPDYAEDVYYSVASVATDELAKALTIGSKAERDARTDELKAE
VLARLADTHEGREKEISAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRA
HGSALFERGETQILGITTLDMMKMAQQVDSLGPETTKRYMHHYNFPPYSTGETGRVGSPK
RREIGHGALAERALIPVLPSVDEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPL
KAPVAGIAMGLVSDDVDVNGKSERRFVTLTDILGAEDAFGDMDFKCAGTKDFVTALQLDT
KLDGIPSQVLAGALAQAKDARLTILEVMAEAIDAPDEMSPYAPRVTTIKVPVDKIGEVIG
PKGKVINAITEETGAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGT
VVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL
VLVEEDSAAPVDAGVPEEAAPADAATASS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgaatcgaccgccacgatcgacaacgggagcttcggtacccggaccattcgtttc
gagaccggccggctggccctgcaggccgccggttccgtcgccgcctacctcgacgacgaa
aacatgctgctgtccgcgacgacggcaagcaagtcgcccaaggaacacttcgacttcttc
ccgctcacggtcgacgtcgaggagcggatgtacgccgcgggccgcattcccggctccttc
ttccgtcgcgagggacgtccctccaccgacgcgatcctgacctgccggttgatcgaccgg
ccgctgcgcccgtccttcgtcgacggcctgcgcaacgaaatccagatcgtcgtgacggtc
ctgagtctggaccccaacgacctgtacgacgtgctggcgatcaacgccgcgtcggcctcc
acccagctgagcggcctgccgttctcgggaccgatcggtggggtgcgggtcgcgctgatc
gacggcacctgggtcgcgttcccgacggtcgagcagctcgaccgcgccgtgttcgacatg
gtcgtcgccggacgcaaggtcggcgagggtgacaacaaagacgtcgcgatcatgatggtc
gaggcggaggccaccgagaacgtcatcgaactcgtcgaaggtggcgcccaggcgccgacg
gaaaccgttgtggccgaaggacttgaggctgccaagccattcatcgccgcattgtgcacc
gcacaggaggagttggccggcgccgccgccaagccgaccggcgagtaccccacattcccc
gattacgccgaggacgtctactactccgtcgcctcggtggccaccgacgagctggccaag
gcgctgaccatcgggagcaaggccgaacgcgacgcgcgcaccgacgagctcaaagcggaa
gtgctggcgcggctcgccgacacccatgagggccgggaaaaagagatctcggcggctttc
cgttcgctcaccaaaaagctggtgcgccaacgcatcctgaccgaccacttccgtattgac
ggccgtggcatcaccgacatccgggccctgtcggccgaggtcgccgtcgtcccccgggcg
catggcagcgcgctgttcgaacgcggtgaaacccagattctgggcatcaccacgctggac
atgatgaaaatggctcagcaggtcgactcgctgggacccgagaccaccaagcggtacatg
caccactacaacttccccccctactcgacgggtgagactggccgcgtgggctcacccaag
cgccgcgagatcgggcatggcgcgctcgccgagcgggcgctgatcccggtgctgcccagc
gtcgacgaattcccctacgccatccgccaggtgtcggaagcgctgggctccaacggttcg
acctcgatggggtcggtctgcgcgtccacgctggcgttgctgaatgccggtgtgccgctg
aaggctccggtggccggcatcgcgatgggcctggtctccgacgacgtcgacgtgaatggc
aagtcagagcgtcgcttcgtcacgctgaccgacatcctgggcgccgaggacgcgttcggc
gacatggacttcaagtgcgcgggcaccaaggacttcgtgaccgccctgcagttggacacc
aagctcgacggcatcccgtcgcaggtgctcgccggtgcgctggcccaggccaaggatgcg
cgtctgaccatcctcgaggtgatggccgaggccatcgatgcgcccgacgagatgagcccg
tacgccccacgcgtgaccaccatcaaggtcccggtcgacaagatcggtgaggtcatcggg
cccaagggcaaggtgatcaacgcgatcaccgaggagaccggcgcgcagatctccatcgag
gacgacggcaccgtgttcgtcggcgcgaccgacggcccctcggcccaggccgcgatcgac
aagatcaacgccatcgccaacccgcagctgccgacggtcggcgagcgattcctcgggacc
gtcgtcaagacaacggatttcggcgctttcgtgtcgctgctgcccggccgcgacggtctg
gtgcacatctccaagctcggcaagggcaagcgcatcgccaaggtcgaggacgtggtcaac
gtcggcgacaagctgcgggtggagatcgccgacatcgacaagcggggcaagatctcgctg
gtcctggtggaagaggacagcgccgcacccgttgacgccggagttcccgaggaggccgcg
ccagccgatgccgcgaccgccagcagctga
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