Mycobacterium simiae: MSIM_12110
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Entry
MSIM_12110 CDS
T07396
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msim
Mycobacterium simiae
Pathway
msim03420
Nucleotide excision repair
msim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSIM_12110
03430 Mismatch repair
MSIM_12110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msim03400
]
MSIM_12110
Enzymes [BR:
msim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSIM_12110
DNA repair and recombination proteins [BR:
msim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSIM_12110
MMR (mismatch excision repair)
Other MMR factors
MSIM_12110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
BBX39760
LinkDB
All DBs
Position
complement(1308377..1311679)
Genome browser
AA seq
1100 aa
AA seq
DB search
MTPQPRYSPHELASALGLFPPTEEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLIAN
GYADPGQVLGLTFTRKAAGQLLRRVRSRLARLSGIGLGIIGSPDTCAPTVSTYHAFAGSL
LREYGLLLPVEPDTRLLSETELWQLAFDVVNGYDGQLSTDKTPAAVTAMVLRLWGQLTEH
LVDTDQLRDTHLELERLVHALPAGPYQRDRGPSQWLLRLLAAQTERTELVPLLDALQERM
REAKAMDFGGQMAAAARLAVNCPQVGADLRSRYRVVLLDEYQDTGHAQRIALSALFGGGV
DDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPSALHI
ANAISADARRRSVAVHALRPRPDAAPGTVRVALLADAQAERDWIADHLHERYQRVAADGV
SPPTAAVLVRRNADAAPIAKALRARGIPVEVVGLAGLLSVPEVADLVAMLRLVADPTAGA
AAMRVLTGPRWRLGGRDVAALWRRARALYAAHPAAESSAQAIALAASPSRIDDTACLADA
IDDPGPASAYSVAGYQRISALAGELTALRGHLGHSLPDLVAEVRRTLGLDCEVRAAAGHR
AWAGAEHLDAFADVVAGYAERNSTPERHSAAAASVMGLLAYLDVAETVENGLAPAPLAAA
RDRVQVLTVHSAKGLEWEVVAVAHLSGGTFPSTASRSSWLTDAAELPPLLRGDRASAGSL
GIPVLDLSDVTNRKQLSDKISEHRRSLEQRRIDEERRLLYVGITRSEDTLLVSGHHWGPT
GIKPRGPSEFLCELKDIIDRSAGVGDQCPVVEQWAPAPSDGERNPLRNNVIEAVWPVDPL
ADCRADVEHGAALVAAAMAVGAPQHCVDIEGWATDVDALLAERARSERRTARVLPSQLSV
SGLVDLARDPDGAVQRLVHRLPTRPDPHALLGNAFHSWVQQFYGTEALFDLGDLPGAADS
EFGHTDELAALQAAFTRSPWAARTPIAVEVPFEMAIGDTVVRGRIDAVFAEPDGGATVVD
WKTGEPPRGPEAMRQAAVQLAVYRLAWAALSGCAESSVRTAFHYVRTGVTISPAELPDAS
ELAGLAPAGRVTTQVSDGGV
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgcagccgcgctacagtccgcacgaattggcttctgcgctaggtcttttcccg
cctaccgaagagcaggccgccgtgatcgccgcgccgccgggtccggtggtcgtgatagcg
ggggcgggtgccggaaaaaccgagacgatggccgcgcgggtggtatggctgatcgccaac
ggttacgccgatcccggccaggtgctggggttgacgttcacccgcaaggccgccggtcaa
ctgttgcgccgggtccggtcccggctggccaggctgtccggcatcggcctgggcattatc
ggatcccccgacacctgcgcacccaccgtcagcacctatcacgcgttcgccgggtcgcta
ctgcgtgagtacggcctcttgctgccggtcgagccagacacccggctgctcagcgaaacc
gagctctggcagctggccttcgacgtggtcaacgggtacgacgggcagctgagcaccgac
aagacaccggccgcggtcaccgcgatggtgctgcggctgtggggacagctcaccgagcac
ctggtggacaccgatcagcttcgcgacacgcacctggagttggagcggttggtgcacgcc
ctacccgccggcccctaccagcgtgaccgcgggcccagccaatggctgcttcggctgctg
gccgcccagaccgaacgcaccgaactggtgccgctgctcgacgcattgcaggaacgaatg
cgcgaggcgaaggcgatggacttcggtggacaaatggcggcggctgcccggcttgcggtg
aactgcccgcaggtcggagcggacctgcgcagccgctaccgggtggtgctgctggacgaa
taccaggacaccggccacgcccagcggatcgcgctgtcggcgctattcggcggcggtgtc
gacgacggactcgcgctcaccgctgtcggcgatcccattcagtcgatctacggctggcgc
ggtgcctcggcgaccaacttgccgcggttcaccaccgacttcccccgctccgacgggacg
ccggcgccggtcctggaactgcgcaccagctggcgtaacccgcctagcgccctgcacatc
gccaacgccatctcggcggatgcgcgtcgccgatccgtcgcagtgcacgcgctgcgaccg
cggcccgatgccgcacccggcacggtccgcgtcgcgttgctggccgacgcgcaggccgaa
cgcgactggatcgccgatcacctgcacgagcgttaccagcgggtagcggccgacggcgtc
agcccaccgaccgcggcggtgctggtgcgccgcaacgccgatgccgcgccgatcgccaag
gcactgcgcgcgcggggcatcccggtcgaggtggtcggtttggccggactgctgtcggtt
cccgaggtcgccgacctggtggccatgctgcggctggtcgcggatcccactgccggcgcc
gcggccatgcgggtgctgaccggtccgcgctggcgactgggcgggcgagacgtcgccgcg
ttgtggcggcgggcgcgggcgttgtacgcggcacacccggccgccgagtcctccgcccag
gcaatcgcgctggcggccagcccgtcccgcatcgacgacactgcatgtttggccgacgcg
atcgacgatcccggacccgccagcgcgtattcagtcgcgggatatcaacgcatttcggca
ttggccggcgagctgaccgccttgcgtggccatttggggcattcgctgcccgacctggtc
gccgaggtgcgacgcacgctggggctggattgcgaagtccgcgccgccgcgggtcaccgc
gcttgggccggggccgaacatctcgacgccttcgccgacgtggtcgccggttatgccgag
cgcaacagcacgccggagcgccacagcgcggcggccgcttcggtgatgggtttgcttgcc
tacctggacgtggccgagaccgtcgaaaacggtttggcgcctgcgccgttggcggcggcc
cgggaccgggttcaggtgctcaccgtgcattcggcgaagggcctggagtgggaggtggtc
gcggtggcccacttgtccggcggaacgtttccgtcgaccgcgtcgcgcagtagttggctc
accgatgcggccgagctgccgccgctgttgcgcggtgatcgcgcctcggccggctcgttg
ggcatcccggtgctcgacctgtcggacgtcaccaaccgtaagcagctgtcggacaagatc
tccgagcatcgccgcagtttggagcagcggcgcatcgacgaagagcgccggctgttgtac
gtcggcatcacccggtccgaggacacgctgctggtctccggccatcactggggtcccacc
gggatcaaaccccgcgggccgtcggaattcctctgtgagctcaaagacatcatcgaccgg
tcggctggggtcggcgatcaatgcccagtggtcgagcagtgggcgccggcgccctccgat
ggagaacgaaacccgttgcgcaacaacgttatcgaagcggtatggcccgtcgatccgctg
gccgactgccgcgctgacgtcgagcacggggcggcgctggtggcggcggcgatggctgtg
ggcgcgccgcaacactgcgtcgacatcgaaggctgggccactgatgtcgacgcgttgctg
gccgagcgtgcgcgttccgagcggcggaccgcccgcgtgctgcccagccagctgtcggtc
agcggcctggtggatttggcccgcgaccccgacggcgcggtgcagcggctggtgcatcgg
ctgccgacccggcccgatccgcatgcattgttgggcaatgcctttcattcctgggtgcag
cagttctacgggacggaggcgctgttcgatttgggcgatctgcccggcgcggcggactcg
gagttcggccacaccgacgagctggccgcactccaggcggcgttcacccgatcgccgtgg
gcagcgcgcacaccgattgccgtcgaggtgcccttcgagatggccatcggggacacggtg
gtgcgcgggcgtatcgacgccgtcttcgccgaacccgacggcggggccaccgtggtggac
tggaagacgggggaacctccgcggggaccggaagcaatgcggcaggccgccgtccagctc
gcggtctaccgcttggcgtgggccgcgctgtccggatgtgcggagtcctcggtgcggacc
gcgttccactacgtgcgtaccggcgtcacgatcagcccggccgaacttcccgacgcgagc
gagctcgccgggctcgccccggctggcagggtgacgacgcaggtgagcgatggcggggtc
tga
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