Mycobacterium simiae: MSIM_15220
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Entry
MSIM_15220 CDS
T07396
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
msim
Mycobacterium simiae
Pathway
msim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSIM_15220 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msim03021
]
MSIM_15220 (rpoA)
03400 DNA repair and recombination proteins [BR:
msim03400
]
MSIM_15220 (rpoA)
Enzymes [BR:
msim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSIM_15220 (rpoA)
Transcription machinery [BR:
msim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSIM_15220 (rpoA)
DNA repair and recombination proteins [BR:
msim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSIM_15220 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
BBX40071
LinkDB
All DBs
Position
complement(1648602..1649645)
Genome browser
AA seq
347 aa
AA seq
DB search
MLISQRPTLSEELLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
PAMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEAAYDDQDYAETEQL
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgctgatctctcagcgacccacactgtccgaggaactcctcaccgacagccggtcccag
ttcgtcatcgagccactggagccgggatttggttacaccctgggcaattcgctgcggcgc
acgttgctgtcctcgatccccggcgcggccgtcaccagcattcgcatcgacggcgtactg
cacgagttcaccaccgtgcccggcgtcaaggaggatgtcaccgacatcatcctgaacctc
aagggcctggtcgtgtcctccgaggaggacgagccggtgaccatgtacctgcgcaagcag
ggtccgggtgaggtcaccgcaggtgacatcgtgccgcccgcgggggtcaccgtgcacaac
ccggccatgcacatcgcgacgctgaacgacaagggcaagctcgaggtcgagctcgtcgtc
gagcgcggccgcggctacgtgccggccgtgcagaaccgggcgtccggtgccgaaatcggc
cgtattccagtcgattccatctactcgccggtgctcaaggtgacctacaaggtggacgcg
acccgtgtcgagcagcgcaccgacttcgacaagctgatcctggacgtcgagaccaagagc
tcgatcaccccgcgcgacgccctggcgtcggccggtaagaccttggtcgaattgttcggc
ttggcgcgcgaactcaacgtcgaggccgaaggtatcgagatcgggccgtcgccggccgag
gccgaccacatcgcgtcgttcgcgctgcccatcgacgatctggacctgaccgtgcggtcc
tacaactgcctcaagcgcgagggtgtgcacaccgtcggcgagctggtcagccgcaccgaa
tccgacctgctcgacatccgcaacttcgggcagaagtccatcgacgaggtcaaggtcaag
ctgcaccagctgggcctgtccctcaaggacagcccgccgagcttcgacccgtcggaggtc
gcgggctacgacgtcgccaccggcacctggtccaccgaggctgcctacgacgaccaggac
tacgccgaaaccgaacagctctaa
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