Mycobacterium simiae: MSIM_16290
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Entry
MSIM_16290 CDS
T07396
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msim
Mycobacterium simiae
Pathway
msim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSIM_16290 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msim03021
]
MSIM_16290 (rpoC)
03400 DNA repair and recombination proteins [BR:
msim03400
]
MSIM_16290 (rpoC)
Enzymes [BR:
msim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSIM_16290 (rpoC)
Transcription machinery [BR:
msim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSIM_16290 (rpoC)
DNA repair and recombination proteins [BR:
msim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSIM_16290 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
BBX40178
LinkDB
All DBs
Position
complement(1745835..1749785)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMVVERKGVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWTTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVAGAQGEYQ
PAAKDQPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGQNGWQPGD
AWMAETTLGRVLFNELLPLGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDHYEDRADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGKALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIIVE
LAERQPDGSLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEALLAAGITSV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVQLEDGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgtatcggtttggcgaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgactcgcgccaaggtgcgtcgcgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggtgtgcccagccggttgggctatctgctggatctg
gcgccgaaggatctcgagaagatcatctactttgcggcctatgtgatcacgtcggtcgac
gaggagatgcggcacaacgagctctccacgctcgaggccgaaatggtggtggagcgcaag
ggtgttgaggaccagcgcgacgccgacctggaggcccgcgcccagaagctagaggccgac
ctggccgagctggaggccgagggcgcgaaagccgatgcgcgacgcaaggttcgggatagc
ggtgagcgcgagatgcgtcagatccgcgaccgcgcccagcgcgagctggaccggctggag
gacatctggacgacgttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctggtcgaccgctacggcgagtacttcaccggtgccatgggtgcggagtcg
atccagaagttgatcgagaacttcgacatcgacgccgaggccgagatcctgcgggacgtc
atccgcaatggcaaggggcagaagaagcttcgtgcattgaagcggctgaaggttgtcgcg
gcgttccagcagtcgggcaactcgccgatgggcatggtgctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggttcgcgaccagcgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccgggccgggtaaccgtccgctcaag
tcgctgtcggatctgctcaagggtaagcagggccgattccggcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcatcag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagtgccaagcgcatggtcgagcgtcagcgt
ccccaggtgtgggacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcacccaccctgcaccgcctcggtatccaggctttcgagccgatgctggtggagggcaag
gcgattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagtgccgaggcgcaggccgaggctcgcatcctgatgctg
tcgagtaacaacatcttgtcgcccgcatccggccgtccgcttgccatgccgcgactggac
atggtgaccggtctgtactacctgaccaccgaggtggccggcgcccaaggcgaataccag
ccggcggccaaggaccagccggaggtaggcgtgtactcctcgccggccgaagccatcatg
gcgtcggaccgcggcgtgttgtcggtgcgggccaagatcaaggtgcggttgacgcagctg
cgtccgccggccgagatcgaggccgagctcttcggccaaaacggttggcagccaggcgat
gcctggatggccgagacgaccctgggccgggtgctgttcaatgagctgctgccgcttggc
tacccgttcgtgaacaagcagatgcacaagaaggtgcaggcctcgatcatcaacgatctg
gccgagcgctacccgatgatcgtcgtcgcgcagacggtggacaagctgaaggacgccggt
ttctactgggcgacccgcagcggtgtcacggtctcgatggccgacgtgttggtgccgccg
cgcaagaaggagatcctcgaccactacgaggaccgtgccgacaaggtcgaaaagcagttc
cagcgtggtgctttgaaccatgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtaaggcgctgcgcgagcactaccccagcgacaacccgatcatc
acgatcgtcgactcgggcgctacgggtaacttcacccagacgcgcacgctggccggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgacggtgctggagtacttcatcaacacccacggtgctcgaaagggcttg
gcggacaccgcgttgcgtaccgccgactctgggtacctgacccgtcgtctggtggacgtg
tcgcaggacgtcatcgtgcgcgagcacgactgccagaccgagcgcggcatcatcgtcgag
ctggccgagcgtcagcccgacggaagcctgatccgtgacccgtacatcgaaacatcggcg
tatgcacggactttgggtgccgacgcggtcgacgaggcgggcaacgtcgtggtcgctcgc
ggcgaagacctgggtgacccggagatcgaggcgctgctggccgcgggcatcacatcggtc
aaggtgcgttcggtgctgacctgcaccaccggtaccggggtgtgcgcgacctgctacgga
cgttcgatggcgaccggcaagctggtcgacatcggtgaggccgtcggcatcgtggccgcg
cagtccatcggtgagcccggcacgcagctgacgatgcgtaccttccaccagggtggtgtc
ggtgaggacatcaccggtggtctgccgcgggtgcaggagctgttcgaggcccgggtgccg
cgaggcaaggcgccgatcgccgacgtcaccgggcgggtccagctcgaggacggcgagcgc
ttctacaagatcaccatcgttcccgacgacggcggcgaggaagtcgtctacgacaagctc
tccaagcggcagcggctgcgtgtgttcaagcacgaagacggttccgaacgagtgctgtcc
gacggcgaccacgtcgaggtgggccagcagttgatggaaggctcggccgacccgcacgag
gtgttgcgcgtccagggcccgcgcgaggtgcagatccacctggtccgcgaggtccaggag
gtttaccgggcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgttgcgccgggtcaccatcatcgattcgggcgccacggagttcctgcccggttcgctg
atcgaccgtgcggagttcgaggcggagaaccgccgtgtggtggccgagggcggcgagccc
gcggccggccgtccggtgctgatggggatcacgaaggcgagcctcgccaccgactcgtgg
ctgagtgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggaatcaaccggtaccgcaacatccaggtgcagccgaccgaggaagcccgggcg
gcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcgggcaggcc
accggtgccgcggttccgctggacgactacggctacagcgactaccggtaa
DBGET
integrated database retrieval system
