Mycobacterium simiae: MSIM_41820
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Entry
MSIM_41820 CDS
T07396
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msim
Mycobacterium simiae
Pathway
msim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSIM_41820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msim03019
]
MSIM_41820
03009 Ribosome biogenesis [BR:
msim03009
]
MSIM_41820
Enzymes [BR:
msim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSIM_41820
Messenger RNA biogenesis [BR:
msim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSIM_41820
Ribosome biogenesis [BR:
msim03009
]
Prokaryotic type
rRNA processing factors
MSIM_41820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BBX42731
LinkDB
All DBs
Position
4440191..4442995
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AA seq
934 aa
AA seq
DB search
MIDGDQTSDQTTEPAQEDLPDRLRVHSLARALGTTSKRVLDALAALDGRIRSAHSGVDYE
DAIRVRDLLSPRPPENFVAFSSAAVTTFGAPPSRPVSETPTEHAAYMPLFVAPRPVAADD
DNTADDGVDTDDADDDDDEDQGDRPANRRRRRGRRGRGRGRGEQGGSDGPDDDIDSEQRG
AKPGDMDDSDDSDDDQDSDDSDDGDESSADGGSRRRRRRRRRKSGSSDDNEDGPSPDDPP
NTVVHERTPRGKGSNDNGNGSSNAEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAE
FLARREAVERVMVVRDRVRTEPPHPGARYTQIAVLEDGIVVEHFVTSAASASLVGNIYLG
IVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGADRKIEQALKPGDYVVVQVSKD
PVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPADAGVIIR
TASEGVKEEDIRSDVTRLQQRWEQIEAKATETKEKAAGAAVALYEEPDVLVKVIRDLFNE
DFAGLIVSGDEAWNTINEYVNSVAPDLISKLTKYEPPTGVEGQPGPDVFAVHRIDEQLAK
AMERKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRL
RDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGL
IEAFSTTCPNCGGRGILLHGDPVDSAPAAGRKSDSGGRRGKRSKKTRSEDQPVAKVPVHA
PGEHPMFKAMAAGATGARDNGDGEGDETDAVVATEVDEKTTAQGPADLDDIDQDEYEDTD
QDTDDVDDEDSADDDAEDLDDEDLDDDDDDDDDEDLDDEDLDDDDEDLDDLDEDSDDEDS
DDENGSTNGSGGGLGRHRRRRAAGRPAGPPIHAD
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtgaccagacttcggaccaaacaactgagccggcccaggaagacttgccg
gaccgcctgagagtccactcgctggcacgagcgctgggaaccaccagcaagcgggttcta
gatgcgctggccgcgctggatggacgcatccgcagcgcgcattccggcgtcgactacgaa
gacgcgatccgggtgcgtgacctgctgtcgccccggccgccggagaattttgtcgcgttc
agcagcgccgcggtgaccacgttcggggcaccaccgtctcggccggtatcggagaccccc
accgaacacgccgcctacatgccgctgttcgtcgcgcctcggccggtcgccgcggacgac
gacaataccgccgacgacggtgtcgacaccgacgacgccgacgacgacgacgacgaggac
cagggcgaccggcccgccaaccgacgccgtcggcggggccggcgagggcggggccgcggt
cgcggtgaacagggcggctccgacgggccggatgacgacatcgactccgagcagcgcgga
gcgaaacccggcgacatggacgactcggatgattccgacgacgaccaggattcggacgac
tccgacgatggcgacgaaagctcggccgacggtggcagccggcgccggcgccggcgccgc
cgccgcaagtcgggttccagcgacgacaacgaagacggaccctcgcccgacgatccgccg
aacaccgtcgtgcacgagcggacaccacgcggcaagggttccaacgacaacggcaacggt
tcgagcaacgccgagatcaagggcatcgacggatcgactcggctggaggccaagcggcag
cggcgccgcgacgggcgtgacgccgggcggcgccgcccgccggtgctgaccgaggccgag
tttttggcccgccgcgaggcggtcgaacgggtgatggtggtccgcgaccgggtccgcacc
gagccgccgcatcccggcgcccgctacacacagatcgccgtgctcgaagacggcatcgtc
gtcgagcacttcgtcacctcggcggcttcggcgtcgctggtcggcaacatctacctgggc
atcgtgcagaacgtgctgccgtcgatggaggcggccttcgtcgacatcggccgcggccgc
aatggcgtgctgtacgccggtgaggtcaactgggaagcagccggtctgggcggagcggac
cgcaagatcgaacaggcgctcaagcccggcgactacgtcgtcgtccaggtcagcaaggac
cccgtcgggcacaagggtgcccggctgaccacccaggtgtcgctggccgggcgctacctg
gtctacgtgccgggcgcgtcgtccaccgggatcagccgcaagttgcccgacaccgaacgc
cagcgcctgaaggaaatcctgcgcgaggtggtccccgcggacgccggggtgatcatccgg
accgcctccgagggtgtcaaagaagaggacatccgctccgacgtcacccggctgcagcag
cgttgggaacagatcgaagccaaggcaaccgagaccaaggagaaggccgccggcgcggcc
gtggcgctctacgaagagcccgacgtgttggtcaaggtcatccgcgacttgttcaacgag
gacttcgcggggctgatcgtgtccggcgacgaggcgtggaacacgatcaacgagtacgtg
aactccgttgcccccgacttgatttccaagttgaccaaatacgagccgcccaccggtgtc
gagggtcagcccgggccggacgtgttcgccgtacaccgcatcgacgagcaattggccaag
gcgatggaacgcaaggtgtggctgccttcgggcggcacgctggtcatcgatcgcaccgag
gctatgacggtggtcgacgtcaacaccggcaagttcaccggctccggcggcaacctcgaa
cagacggtcaccaagaacaacctcgaggcggccgaggagatcgtgcgccaactgcggctg
cgcgacatcggcggcatcgtcgtcatcgacttcatcgacatggtgctcgagtccaaccgc
gacctcgtgctgcgccggctcaccgaggcgctggcccgggaccgcacccgccaccaggtg
tccgaggtgacctcgctgggcctggtgcagttgacccgcaaacggttgggcaccggcctg
atcgaggcgttttcgacgacctgcccgaactgcggcggccgcggaattttgctgcatggc
gacccggtcgactcggccccagcagccgggcgtaagtccgactccggcggccggcgaggc
aagcggtcgaagaagacccgctctgaggaccagccggtggccaaggtgccggtgcatgct
ccgggtgagcacccgatgttcaaggcgatggcggccggagccacgggcgcccgcgacaac
ggcgacggtgaaggcgacgagaccgatgcggtggtcgccaccgaggtcgacgagaagacc
acggcgcaaggccccgccgacctcgacgacatcgatcaggacgagtacgaggacaccgat
caggacaccgacgacgtcgacgatgaggactcggctgacgacgacgccgaggacctcgac
gacgaggacctcgacgatgacgatgacgatgacgatgacgaggacctggacgacgaggat
ctcgacgacgacgatgaggacctcgacgacctcgacgaggactccgacgatgaggactcc
gacgacgagaacggctcgacgaacggttccggtggtggactgggacgccatcgccggcgg
cgcgccgccggtcgaccggccggaccgccaatccatgccgattga
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