Mycobacterium simiae: MSIM_43790
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Entry
MSIM_43790 CDS
T07396
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msim
Mycobacterium simiae
Pathway
msim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSIM_43790 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msim03019
]
MSIM_43790 (recQ)
03400 DNA repair and recombination proteins [BR:
msim03400
]
MSIM_43790 (recQ)
Enzymes [BR:
msim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSIM_43790 (recQ)
Messenger RNA biogenesis [BR:
msim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSIM_43790 (recQ)
DNA repair and recombination proteins [BR:
msim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSIM_43790 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
DUF3553
GARS_N
PcrA_UvrD_tudor
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
BBX42928
LinkDB
All DBs
Position
complement(4674334..4675974)
Genome browser
AA seq
546 aa
AA seq
DB search
MTPATGNALNLDALARSQFGWDRLTDDQRTAMRAVLHGRDLLAVLPTGSGKSAIYQVPSL
LTAGATLVVSPLIALQDDQIATIEESGAGHAVAINARLRAEERRHSWRAIEDQHADFIFV
SPEQLASDDVVDRLRKAGLSLIVVDEAHCVSAWGQDFRPDYRRLADVFGTLGDSIPVVAL
TATASVVVRRDIVDQLGLHTPEVVVGGFDRPNLRLTVERHIGPEEKRSAVIDSVSRQSGP
GLLYTATRKDAEDYAQALQNMGLTAAVYHAGMKTAERDAVHVGFRDDRFDVVVATSAFGM
GIDKPDVRFVAHASVPDSLDNYYQQIGRAGRDGKDAVALLFYRPEDLGLARFFSTGRPDE
KLLATVYAALSKARPTKLKELRNHLGIGGRKLTNAINLLDEAGSIQASRNGFRCCAASPK
AAVAAAVRLAELRERVDISRIEMMRGYAETDCCRRGFLLSYFGEQLRTACGNCDICLTAS
RLSDVSLKEPAIPVDTEVRHREWGFGTVIGGDPDRVTVLFDQYGYRVLSMAAIRTHGLLD
VAPARG
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
gtgaccccggcgactggtaacgcgctgaacctcgacgcactcgcccgtagccagttcgga
tgggaccggctcaccgacgatcaacgcacggcaatgcgggctgtcctgcacggccgagat
ctgctcgcggtgctaccgaccggatccggaaaatccgcgatttaccaggtcccgtcgctg
ctgaccgccggtgcgacgttggtggtgtcaccgctgatcgcgttgcaagacgaccaaatc
gccacaattgaagaaagcggggccggccacgcggtcgccatcaacgcccgattacgtgcc
gaagagcgccgacacagttggcgcgcaatcgaagaccagcacgccgacttcatcttcgtc
tcccccgagcagctggccagcgacgatgtcgtcgacaggctgcgcaaagccgggctgtca
ctgattgtcgttgacgaggcgcattgcgtctcggcgtggggacaggacttccggcccgac
taccgacgcctcgccgacgtcttcggaaccctgggcgactcaatcccggtcgtggcgttg
acggcaaccgcgtcggtggtcgtgcgccgcgacatcgtggaccaactcggactgcacacc
cccgaggtggtcgtcggcggtttcgatcgccccaacttgcggctgacggtcgagcgtcac
atcggacccgaggagaagcgatctgccgtgatcgattcggtgtccaggcaatcgggtccg
gggctgctgtacacggcaacccgcaaggacgccgaggattacgcgcaggccttgcagaac
atgggacttaccgcggcggtctatcacgccggcatgaagaccgccgagcgggacgcggta
cacgtcggtttccgcgacgatagattcgacgtcgttgttgccacttcggcatttgggatg
ggcatcgataaacctgacgtgcggttcgtcgcgcacgcctcggtccccgactcgttggac
aactactaccaacaaatcgggcgtgccggccgtgacggcaaagatgcggtggcactgctg
ttctaccgacccgaggaccttgggctggcacgatttttcagtaccggacgacccgacgag
aagctgctcgccacggtgtacgccgcgttgagcaaagcgcgcccgacaaagctgaaagag
ttgcgcaatcacctcggaatcggtgggcgcaagctgacgaatgccatcaaccttcttgac
gaggccgggtcgattcaggccagccgcaacggtttccgctgctgcgcggcgtcaccgaag
gctgcggtcgcagcggccgtcaggctagccgaactacgcgaacgggttgacatcagccgg
atcgagatgatgcgtggctatgccgaaaccgattgctgcagacggggcttcttgctgtcg
tatttcggcgagcagctgcgcaccgcgtgtggcaattgcgacatctgcttgacggcgagc
cggctcagcgacgtcagcctcaaggagccagcaattccggttgacaccgaggtacgacat
cgggaatggggttttggcacggtgatcggcggcgatcccgaccgcgtgaccgtgcttttc
gaccaatacggctaccgggtgttgtcaatggccgcaatacgcacgcacggcctgctggac
gtcgcccccgcccgaggctga
DBGET
integrated database retrieval system
