Magnolia sinica: 131216967
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Entry
131216967 CDS
T09699
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131216967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131216967
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131216967
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131216967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131216967
NCBI-ProteinID:
XP_058067600
LinkDB
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Position
10:71962229..71963555
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AA seq
277 aa
AA seq
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MPTLSPSKPDRPIVIRNVWASNLASEFDLIRDAVDSYPFVAMDTEFPGIVLRPVGAFRSS
ADYNYRTLKANVDLLKLIQLGLTLSDANGNLPTCGTDESYIWQFNFREFDPASDVFANDS
IELLRQSGIDFVKNAIEGIEAAKFAELLMSSGIVLNDAIHWVTFHSGYDFGYLLKLLTCQ
NLPDTQAGFFELIKVYFPTVYDIKHLMKFCNFLHGGLNKLAELLEVERVGVCHQAGSDSL
LTSCTFQKLKESFFNGSTERFAGVLYGLGVENGQTSH
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccctatccccatcgaagcccgaccgtccgatcgtgatccgcaacgtctgggcc
agcaacctcgccagcgagttcgacctcatccgcgacgccgtcgacagctacccgttcgtc
gcgatggacactgaattccccggcatcgtcctccgccccgtcggcgccttccgctcctct
gccgactacaattaccgaaccctcaaggccaacgtcgacctcctcaagctaatccagctc
ggcctcactctctccgacgccaacggcaatcttcccacctgcgggactgatgaatcctac
atctggcagttcaatttccgcgagtttgatcctgcctccgacgtcttcgccaacgactcc
attgagctcctccgccagagcggcatcgattttgtgaagaatgctatagaaggcatcgag
gcggcaaaattcgccgagctcctgatgtcgtctgggatcgtgctcaacgacgccatccat
tgggtcactttccacagcgggtacgacttcgggtatttgctcaagcttcttacatgccag
aatctgccggacacgcaagcagggttctttgagctgatcaaggtgtacttcccaacagtc
tatgatatcaagcatctgatgaagttctgcaacttcttgcatggtgggctgaacaagctg
gctgagctgttggaagtggagcgggttggggtgtgccaccaggcagggtctgatagtttg
ctgacctcgtgcacgttccagaagctcaaggagtcgttcttcaatgggtcgacggagaga
tttgctggtgtgctgtatgggttgggtgttgagaatgggcagactagtcattga
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