Magnolia sinica: 131216981
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Entry
131216981 CDS
T09699
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
msin
Magnolia sinica
Pathway
msin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131216981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131216981
03036 Chromosome and associated proteins [BR:
msin03036
]
131216981
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
131216981
Coactivators
SAGA/TFTC/STAGA complex
131216981
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
131216981
STAGA complex
131216981
TFTC complex
131216981
SAGA complex
131216981
SLIK complex
131216981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH_PAC1
WD40_like
WD_LRWD1
LisH
PALB2_WD40
Cytochrom_D1
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
131216981
NCBI-ProteinID:
XP_058067619
LinkDB
All DBs
Position
10:complement(73007917..73084555)
Genome browser
AA seq
667 aa
AA seq
DB search
MEEEEIEKAVLAYLKKKGFKQTELALQEEQQSKNPSASQTDPDVAKRILFFAESENGPAR
YQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHTQEARAFFNSFREDHEL
IHLRDLQKLEGILSPSHLEEMEFAHTLRQSKVNIKICQYSYELLLQYLHKTQSITMLGIV
NERINFQVSPGQPSSISDDAEAVTLIGSSQDTANQINQKEILWGLLEDSLEERLEKSSGL
LSVSEKVEGENKDGDVEENKKKLPEGGKQGNSIKKLKKDKNVGATGKSVRSETNTISMAP
RVKPELALPTMSTEVEHSILEDLRNRVQLSSLALPSISFYTFINTHNGLNCSSISHDGSL
VAGGFSDSSLKVWDMSKIGRQANTINVQGENESVPSEQLLGSEDGKRSYTLFQGHAGPVY
STTFSPLGDFILSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDR
TARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIG
HRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHTSCVWTLAFSCEGSLLA
SGSADCTVKLWDVTASTKAPKTEDSKSGSANRLRSLKALPTKSTPVYSLRFSRRNLLFAA
GVLSKGA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaagagatcgagaaggcagttctagcttacctgaagaagaagggtttcaag
caaacggagctcgctctccaggaagagcagcagagcaagaatccctcggcttcacagacc
gatcctgacgttgccaaacgtattctcttcttcgccgaatcagagaatggtccggcgcga
taccaagatggttatagcaaactaagatcatggacatatagttcattggatttgtacaag
catgagttgcttcgggtgttgtatcctgtatttatccattgctttatggatcttgtggca
aaagggcatacacaggaagctcgagctttttttaatagcttccgtgaagaccatgaactg
attcatttacgggaccttcagaaattggaagggattctttctccctcacacttggaggag
atggaattcgctcatactcttaggcagagcaaggtcaacataaagatatgccagtattcg
tacgaacttctactgcaatatctacacaagacgcaatccataactatgcttggaatagtc
aatgaacgcatcaatttccaagtctctcctggacagcccagctcaatttctgatgatgca
gaggctgtaactctaattggtagtagccaggatactgctaatcagataaatcagaaagaa
atactgtgggggttgcttgaggattctttagaagaacgtttggaaaagtcctcaggtttg
ctttcagtttctgaaaaagtagaaggcgaaaacaaagatggggatgtggaagagaacaag
aagaaattaccggagggaggaaagcaaggaaattctatcaagaagttgaagaaggacaaa
aatgttggtgcaactggaaaaagtgttcgctccgagacaaacactatttccatggctcct
cgagtgaaaccagagctggccttgcccacaatgtcaacagaagtagaacattctattctt
gaggacctaagaaaccgagtgcagttgagtagcctggcactgccgtctatcagcttttat
acctttattaacacacataatggtttgaactgttcatcaatttcccatgatggttcgctg
gttgctggtggattctctgactcttccctgaaggtttgggacatgtcaaagatcggtcga
caagctaacactattaatgtgcagggagaaaacgaatctgttcctagtgagcaattgcta
ggttcggaggatgggaaaagatcttatacattgtttcaggggcacgctgggcctgtttat
tcaactacatttagtcctcttggggactttattctgtcttcttcttcagactcaacaatt
cgattgtggagcaccaagttgaatgcaaatcttgtgtgctacaagggtcacaattaccca
gtttgggatgttcagttcagtcccgtgggacattattttgccagctcttctcatgatcga
accgctaggatttggtccatggatagaatccaacctttacggataatggctggacattta
tctgatgttgattgtgttcaatggcatgcaaactgtaactacattgcaactgggtctagt
gacaagacggttagattatgggatgttcaaagtggggaatgtgttcgtattttcattggt
caccggagtatgatattgtcattagcaatgtcaccagatgggcgatatatggcatctgga
gatgaggatgggacgatcatgatgtgggatctatcaagtggtcgctgtgttacaccttta
atggggcacacctcttgtgtatggacactcgctttcagctgtgaaggttcactgctggca
tctgggtctgcagattgcactgtaaagctatgggatgttactgcaagcacaaaggcccca
aagacagaagacagcaaaagtggaagcgcaaacaggctgagatcattaaaggctctgcct
accaaatccacccccgtctattctctgcggttctctcggaggaatcttttatttgcggcc
ggagttctctcaaaaggtgcatga
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