Magnolia sinica: 131217269
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Entry
131217269 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03013
Nucleocytoplasmic transport
msin03015
mRNA surveillance pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131217269
09122 Translation
03013 Nucleocytoplasmic transport
131217269
03015 mRNA surveillance pathway
131217269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131217269
03041 Spliceosome [BR:
msin03041
]
131217269
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131217269
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131217269
Spliceosome [BR:
msin03041
]
Complex C
Other components
EJC/TREX
131217269
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131217269
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
131217269
NCBI-ProteinID:
XP_058068143
LinkDB
All DBs
Position
1:complement(130982166..130991248)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEARDNDAYEEELLDYEEEEEKAPDSVAAKGAGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LAREKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagcgagggacaacgacgcctacgaggaagagcttcttgactacgaagaagaa
gaagagaaggcccccgattctgtcgcggccaaaggcgctggagaatctgcgaagaagggc
tatgtcggaattcacagttcgggattcagagacttccttttaaagccagagctgctccga
gctatcgttgattcaggatttgagcatccttctgaagtgcaacatgagtgcatccctcaa
gctatcttggggatggatgttatctgccaagcaaagtccggaatggggaaaactgctgta
tttgttctctcaaccctgcagcaaattgagcctgttgcagggcaagttgctgcacttgtc
ttatgccatacaagggagctcgcttaccagatctgtcacgagtttgagaggttcagcacc
tacttacccgatattaaagttgccgtattctatggtggtgtgaacatcaaaattcacaag
gacttgcttaagaatgagtgcccacatatcgttgttgggacccctgggaggatactggca
ttagcaagagaaaaagaccttgcattgaagaatgttaggcattttatccttgacgaatgt
gacaaaatgctcgagtcgcttgacatgcggagagatgtgcaggagatatttaaaatgact
cctcatgataagcaagtcatgatgttttcagcgacactaagcaaggagattcgtcctgtc
tgcaagaaatttatgcaagatccaatggaaatatatgtggatgatgaggccaagctgacc
ctccatggtctagtacagcactacatcaaattgagcgagttggaaaaaaaccgcaagctg
aatgatctcctagatgctttggatttcaatcaggttgtcatctttgtcaaaagtgtaagc
agggcagctgagctgaacaagttgctcgtggaatgtaacttcccatctatctgcatccac
tctggaatgtcacaggaggaaaggttgacgcgttacaagggcttcaaggagggccacaaa
aggattcttgttgcaacggatttggttggcaggggaatagacattgagcgtgtcaacatt
gtcatcaactacgacatgccagattctgctgacacctacttgcacagggttggcagggct
ggtcggtttggtaccaagggacttgcaatcacatttgtttcgtctgcttcagattctgat
gttcttaatcaggtgcaagaaaggtttgaggtggacataaaggagcttccggagcaaatt
gacacctctacatacatgccatcataa
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