KEGG   Magnolia sinica: 131217464
Entry
131217464         CDS       T09699                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
msin  Magnolia sinica
Pathway
msin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131217464
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msin03019]
    131217464
Messenger RNA biogenesis [BR:msin03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     131217464
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd EIF3I WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_Aladin WD40_RFWD3 Beta-prop_SCAP NBCH_WD40 eIF2A Beta-prop_Vps41 Cytochrom_D1 Beta-prop_WDR41 Ge1_WD40 Beta-prop_SPT8 Beta-prop_WDR11_1st Tricorn_2nd Beta-prop_NUP159_NUP214 Beta-prop_VPS8 CFAP43_N Beta-prop_IFT140_1st Beta-prop_HPS5 WD_LRWD1 Beta-prop_ACSF4 Beta-prop_WDR75_2nd Beta-prop_DCAF4 B-prop_COPA_B_2nd Beta-prop_RIG_1st PD40 Beta-prop_pof12 DUF5711 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 131217464
NCBI-ProteinID: XP_058068384
LinkDB
Position
10:86876150..86887982
AA seq 322 aa
MKLAGLKSVENAHEESIWAVTWVPATDARPALLLTGSLDETVKLWRPDELISEGTNTGHC
LGVISVAAHPSGVIAASASLDSFVRIFDVDTNATISTLEAPPSEVWNMQFDPNGTVLAVA
GGGSASVMLWDTATWQLIATLVVPRPEGSRPSDKGGSGKFVLSVAWSPDGRRIACGSMDG
TVTVFDVARAKFLHHLEGHSMAVRSLVYSPTDPRVIFTASDDAHVHMYDAEGKSLVGAMS
GHASWVLSVDVSPDGVAIATGSSDRTVRLWDLGMRAAVQTMSNHADQVWGVSFHSPTGGT
GGRASRLASVSDDRSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagcttgctggtttgaaatctgtggagaatgcccacgaggagtcaatttgggcagtt
acttgggtcccagctactgatgcccggcccgcacttttgctgacgggatctcttgatgaa
actgtgaaactctggcgtcctgacgagctcatctcagagggtaccaatactggtcactgc
cttggtgtcatctctgtggctgcccatccttcaggagtcattgcggcctcagcttctttg
gacagctttgtccgtatttttgatgtcgataccaatgccacaatctcaactcttgaggcc
ccaccatctgaagtctggaacatgcagtttgatcctaatggtactgttctggcagttgcc
ggtggaggtagtgcctctgtcatgctatgggacaccgctacatggcagctgatcgcgacc
ctagtggtcccacgcccagaaggatcaaggccctccgacaagggtggcagtggaaagttt
gttctgtcagttgcatggagtcccgacgggagacgtatagcttgtggctccatggatggc
acggtcactgtctttgatgttgcacgcgccaagttccttcatcacctggaaggccactcc
atggcagtgaggtcgctcgtgtactccccgacagacccacgtgtgatctttacagcatct
gacgatgcacatgtgcacatgtatgatgctgaggggaagagccttgttggggccatgtcg
ggccatgcaagttgggtgttgagtgtagacgtgagcccagacggtgtagccatcgcgact
ggatctagcgatcggacagtccggctttgggacctgggcatgagggctgctgtccagacc
atgagcaaccatgcagaccaggtctggggagtatcattccactctcccactggcgggact
ggtggacgtgccagccggcttgccagcgtgtcggacgacaggagcatctcattgtatgat
tactcttga

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