Magnolia sinica: 131217555
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Entry
131217555 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131217555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131217555
03041 Spliceosome [BR:
msin03041
]
131217555
03009 Ribosome biogenesis [BR:
msin03009
]
131217555
03016 Transfer RNA biogenesis [BR:
msin03016
]
131217555
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131217555
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131217555
Spliceosome [BR:
msin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131217555
Complex C
U4/U6.U5 tri-SnRNP related factors
131217555
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Helicases
131217555
Transfer RNA biogenesis [BR:
msin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131217555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Tox-REase-2
Motif
Other DBs
NCBI-GeneID:
131217555
NCBI-ProteinID:
XP_058068474
LinkDB
All DBs
Position
10:87527945..87547090
Genome browser
AA seq
999 aa
AA seq
DB search
MEESHTPSKRKAPEPSESTPDETPKPDSTPKRRSIARTCVHEVAVPTDYTFAKDSDVYGT
HSNPTYTGDPAKSYPFDLDPFQKVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFREK
QRVIYTSPLKALSNQKYRELHQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKMVFLSATLSNATEFAEWICSIHKQ
PCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFKEENFMKLQDAFAKQKKQQGDGNR
SGGPKAGGRIAKGGTASGGSDIYKIVKMIMERKFQPVIIFNFSRRECEQHAMSMSKLDFN
TKEEKDSVEEVFKNAILCLSEEDRNLPAIELMLPLLKRGIAVHHSGLLPIIKELVELLFQ
EGLVKALFATETFAMGLNMPAKTVVFTSFKKWDGDSHRYIGSGEYIQMSGRAGRRGKDER
GICIIMIDEEVEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRSEGQFTAEHVIKNSFH
QFQYEKALPDIGQKVSKLEKEAEMLDASGEAELAEYHKMRLDIGQLEKKMMSEISRPERV
LYFLTPGRLVKVRDGGTDWGWGVVVSVVKKPAAALGTLPSALASLRSSVYIVDTLLHCSP
GLSENGSRPKPCPPRPGEKGEMHVVPVQLPLICALSSIKISLSSDLRPAEARQSILLAVQ
QLGTRFPQGLPKLDPVKDMGIDDPEFVDLVNQIEELEQKLVAHPLHKSLENEQQTKCFER
KAEVNHEIQQLKSKMRDSQLQKFRDELRNRSRVLKRLGHVDADGLVQLKGRAACLIDTGD
ELLVTELMFNGTFNDLDHHQVAALASCFIPGDKSNEQIHLRTELAKPLQQLQDTARRIAE
IQRECKLEVNVDEYVESTVRPYLMDVIYCWSKGASFADIIEMTDIFEGSIIRLARRLDEF
LNQLRAAAHAVGEADLENKFAAASECLRRGIMFAGSLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatctcatactcccagcaagcggaaagctccggaaccttctgaatccacaccc
gatgaaacccccaaaccagattccacaccgaaacgccgtagtattgcccgtacatgtgtc
catgaggttgcggttcccaccgactacaccttcgcaaaggattcagatgtctacggcact
cactcgaatcctacatacacaggggatcctgcgaaatcctacccgttcgatcttgaccca
ttccagaaagtgtcaattgcatgtctggaacgcaatgagtctgtcctagtctctgcccac
acctccgctgggaagactgccgttgcggagtatgcaattgcgatgtccttcagggagaag
cagcgtgtcatttacacgtctcctttaaaagcgcttagcaatcagaagtaccgtgagctg
catcaagagttctcggatgttggattgatgactggcgatgtcacgctatcaccaaatgca
agctgtcttgtcatgacgacggagatcctacggggcatgctgtaccgtggctctgaggtc
ctgaaggaagttgcatgggttatctttgacgagatccattatatgagggatcgggagagg
ggggtagtttgggaagagagtattatattcctgccgcctgcaattaagatggtgttcttg
tcggcgacattgtcgaatgcgacagagtttgcggaatggatctgtagtatccataagcag
ccttgtcatgtggtgtacacagatttccgaccaacccctctgcagcactatgtgtttccc
atgggtgggtctgggttgtatcttgttgttgatgagaatgagcagttcaaggaggagaat
ttcatgaagttgcaggatgcatttgcgaagcagaagaagcagcagggagatgggaatagg
agcgggggtccgaaagcaggtgggaggattgcgaagggtggaactgcttcagggggttca
gacatttataagattgtaaagatgatcatggaacgaaaatttcaaccagttatcatattt
aacttcagtagaagagagtgtgaacagcacgcaatgtccatgtccaagcttgacttcaac
accaaagaggagaaagatagcgtggaagaggttttcaaaaatgcaatactttgcttgagt
gaagaggacagaaatttgcctgctattgaattaatgctgccacttcttaaacgaggtatt
gctgtacatcattcaggccttctaccgataattaaggaattggtggagcttctcttccaa
gagggcctcgtaaaggccctgtttgccacagaaacatttgctatgggcttaaacatgcct
gcaaaaactgttgttttcacatcttttaagaaatgggatggcgatagtcaccgttatatt
ggatctggagaatatatccagatgagtggaagagctggacgacgtggaaaagatgaacgt
ggtatttgtatcataatgattgacgaggaggtggagatgaatactctcaaggacatggtt
ttgggtaaacctgctcctctggtcagtaccttcagactgagctactactcgattttgaat
ttgatgagtcgtagtgagggccaatttacagctgagcatgtcatcaagaattcctttcac
caattccagtatgagaaggcattgccagatattggtcaaaaggtttcaaagcttgaaaag
gaagctgagatgcttgatgcctcaggggaggccgaacttgctgagtatcacaagatgaga
cttgatataggccaacttgagaagaagatgatgtcagaaataagcagacctgaaagggtt
ctgtatttcctgactcctggtaggctggttaaggtacgggatggtggaactgattggggt
tggggtgtggtggtcagcgtggttaaaaagcctgctgcagcattgggcactttaccctct
gcactggcttctttgcgcagtagtgtttacatagtggacaccttgcttcattgttctcct
ggtctaagtgagaatggttctcgcccaaagccatgccctcctcgtcctggtgaaaagggt
gaaatgcacgtggttcctgtgcagttgcctctaatttgtgctctcagcagtataaaaata
tctttatcttctgatctccggccagcagaagcaagacaaagtatactccttgcagtacag
cagctggggacgcgctttccccaaggcttgccaaaacttgatcctgtgaaggatatgggc
attgatgatccagaatttgttgacttggttaatcaaatcgaggagcttgagcagaaattg
gttgctcatccacttcataagtcgttggaaaatgaacaacaaaccaaatgtttcgaaagg
aaggcagaggtgaatcatgaaattcaacagctgaaatccaagatgcgggactctcagctt
caaaaattccgtgatgagttgagaaatcgttcaagagttttgaagaggctgggccatgtt
gatgctgatggtttggtccaattgaagggacgggctgcctgcttgatagacacaggagat
gaactccttgtcactgagttgatgttcaatggtacattcaatgatcttgatcaccatcaa
gttgcagctcttgcaagctgcttcattcctggagataaatcaaatgagcagatacatctg
cgaactgagcttgcaaagccattacaacagcttcaagacactgcaagaagaattgcagag
atacaacgcgagtgcaagttggaggtcaatgtggacgagtatgtggagtcaactgtgcgt
ccgtacttgatggatgtcatctattgttggtcaaagggtgcaagttttgctgatattatt
gaaatgactgatatttttgagggaagcattatccgccttgcaagaaggctggatgagttt
ttaaaccagttgcgtgctgctgctcatgctgtaggagaagccgatctggagaacaagttt
gcagcggctagtgagtgcctccggagaggaataatgtttgccggctctctctacctgtga
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