Magnolia sinica: 131219149
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Entry
131219149 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131219149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131219149
03012 Translation factors [BR:
msin03012
]
131219149
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131219149
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131219149
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131219149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
131219149
NCBI-ProteinID:
XP_058070137
LinkDB
All DBs
Position
11:complement(53038998..53135374)
Genome browser
AA seq
1025 aa
AA seq
DB search
MSLLLLGLGGSGSTSVRWCWCGRSGTSVLRLPFGFRAIMSGQGHHHHHPNSNMRGRRGGG
RGGGRGGEQRWWDPVWRAERLRQKAAEVERLNENEWWTKMQQIKEGGQQELIVKRNYGRE
GQQTLSDMAHQLGLYFHAYNKGKTLVVSKVPLPNYRADLDERHGSTQKEIQMSIETEKRV
GNLLEISKGALAVHDSVGPSGHESKQSLLAPAVPRGGLISEEDSVKEKYSVELRNRQHTL
KASQSVKAMQSFREQLPAYKVKAEFLKAVAENQVHVVSGETGCGKTTQLPQFILDEEISC
LRGAECNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLEAKRSKETRLLFCTTGV
LLRQLVQEPDLAGVSHLIVDEIHERGINEDFLIIILRDLLPRRPDLRLILMSATINADLF
SKYFGNAPTIHIPGRTFPVAEVFLEDVLEKTRYSIKSEFDSFQGNTRRRRRQTEFKKDLL
TELFEEVDIDSHYRNYSTATRHSLEAWSGSQLDLGLVESTIEHICRNEGVGAILVFLTGW
DDISKLLEKIKANSLLGISSKFLILPLHGSMPTVNQREIFDRPPNNMRKIVLATNIAESS
ITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGKCYRLYPK
IIYDAMHEYQLPEILRTPLQELCLHIKSLQLGTIASFLAKALQPPDPLSVENAVELLKTI
GALGNMEELTPLGRHLCTLPLDPNIGKMLLMGCIFQCLDPALTIASALAHRDPFVLPINR
KAEADAAKRSFAGDSCSDHIALLKAFEAWKDAKRNGQERAFCWENFLSPITLRMMDDMRN
QFIDLLSDIGFVNKTRGAKAYNQYSDDLEMVCAILCAGLYPNVVQCKQRGKRTAFYSKEV
GKVDIHPSSVNAGVHIFPLPYIVYSEKVKTTSVYIRDSTNISDYSLLLFGGNLAPSKTGE
GIEMLDGYLHFSASKSVLLLIQTLREELTKLLGRKIEEPELDIPAEGKGVVAAAVELLHS
QNIRL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttttattactgggattgggaggtagtgggagcacaagtgtgaggtggtgttgg
tgcggtaggagtgggacgtctgttcttcgtcttccatttggatttcgagctatcatgtct
ggccagggccatcatcatcatcatcccaactccaacatgagaggcaggaggggtggtggt
agaggaggagggcgtggtggtgagcagaggtggtgggatcctgtctggcgggctgaacgt
ttgaggcagaaggctgctgaggtagaaaggcttaatgagaatgagtggtggactaaaatg
cagcaaattaaagaaggaggtcagcaggaattgatagttaagcgcaactatgggcgggag
gggcagcaaaccctgtcagatatggctcaccaactaggcctttacttccatgcatacaac
aaaggtaagacacttgttgtcagcaaggttccgttgccaaattaccgggctgatcttgat
gaacgacatggttcaacacagaaagagattcagatgtccatagagacagagaagagagta
ggaaatcttttggaaatctctaaaggagcattagctgtccatgattctgttggcccatca
ggtcacgaaagcaaacaatctttacttgccccagcagtacccagaggtgggttgatatca
gaggaggattctgtgaaggaaaaatatagtgttgagcttaggaacaggcagcacacattg
aaggcatcccagagtgtaaaagcaatgcaatctttcagggaacagttgccagcttacaaa
gtgaaagctgaatttctgaaagctgtggcagagaatcaggtccatgtagtttcaggagag
acaggttgtggaaaaacgacacagttaccccaatttatattagatgaggagatctcatgc
cttcgtggggcagaatgcaatataatatgcacacaaccccgtcgcatatctgctatatct
gttgcagctcgagtttcttctgaaaggggtgaaaatcttggagaaactgtgggttaccag
attcgtttagaagcaaaacgttccaaggaaacaagacttttattttgtacaacaggagta
ctactacgacagctggtccaagaaccagatttagctggtgttagccatttaatagtggat
gaaattcatgaaagaggcataaatgaggattttctcataataattttgcgtgaccttctt
ccccggcgcccagatttgcggcttattctgatgagtgccacaataaatgcagatcttttc
tccaaatattttggaaatgcaccaaccatacacataccgggacgtacttttcccgtagca
gaagtgttcctagaagatgtgcttgagaaaacacgctacagtatcaaatcagagtttgac
agcttccaaggaaatacaaggagaagaaggagacagacggaatttaaaaaagacctgttg
actgagttgtttgaggaggttgatattgattcacattacagaaactacagcacggctacg
agacattcacttgaagcctggtccggttcccaacttgatctgggtcttgtggaatcaaca
attgagcatatttgtcgcaatgaaggggttggggcaatccttgtgttccttacaggttgg
gatgacatatcgaaactactggaaaagattaaagcaaacagccttcttggaatttcaagc
aagtttctgattcttccactacatggttcaatgcctactgtcaatcaacgtgaaatattt
gatagaccaccaaataatatgcggaaaattgtgttggcaacaaatattgcagagagcagt
attaccattgatgatgtcgtatatgttatagattgtgggaaggctaaggaaaccagttat
gatgctctaaataagttggcatgtctgttaccatcatggatatctaaagcttcagcacat
cagagacgaggacgtgcagggcgtgtgcagcccggaaaatgttacaggctataccccaag
ataatttatgatgcgatgcatgaatatcagttacctgaaatcctccggacacctttacaa
gaactatgccttcatatcaaaagcttacagcttggaaccattgcatcgttcttagcaaag
gcacttcaaccacctgatcctctttccgttgaaaatgctgttgaacttctcaaaacaata
ggagctctcggtaacatggaggagctcactccacttggtcgccatctttgcacccttccg
ttggatccaaacattggaaaaatgcttctcatgggatgtatctttcagtgcctcgatcct
gcactaacaattgcttctgctcttgcacatcgtgacccgttcgtccttccaataaatagg
aaagctgaagctgatgctgcaaaaagatcctttgctggtgactcttgcagcgatcacatt
gcgcttctcaaagcatttgaagcatggaaagatgctaagcgcaatggccaagaacgagca
ttctgttgggagaattttttatcgcccataacattgcggatgatggatgacatgaggaac
caattcatcgatctgctctcagatatcggttttgttaataaaactaggggagctaaggct
tataatcaatacagtgatgatctggagatggtatgtgctatcctgtgtgctgggctttac
cccaacgttgtgcaatgcaaacaaagaggaaagagaactgcattctacagtaaagaagta
gggaaagttgatatccatccatcttctgtcaatgctggtgtacacatctttcctctgcct
tacattgtgtacagcgaaaaggtaaagaccaccagcgtttacatcagagactcaaccaac
atatcagactattctctgcttctctttggaggcaacctcgcaccaagcaaaacaggagag
ggcatcgagatgctcgatggttaccttcatttctcagcatcaaagagtgtgttgctactg
attcagacattgagagaggaactgaccaagcttcttgggaggaagattgaggagcctgag
ctggacatccctgctgagggaaagggggttgttgctgctgctgttgaattgctgcacagc
caaaatatacgcctctag
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