Magnolia sinica: 131219374
Help
Entry
131219374 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131219374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131219374
03041 Spliceosome [BR:
msin03041
]
131219374
03009 Ribosome biogenesis [BR:
msin03009
]
131219374
03016 Transfer RNA biogenesis [BR:
msin03016
]
131219374
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131219374
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131219374
Spliceosome [BR:
msin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131219374
Complex C
U4/U6.U5 tri-SnRNP related factors
131219374
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Helicases
131219374
Transfer RNA biogenesis [BR:
msin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131219374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
131219374
NCBI-ProteinID:
XP_058070459
LinkDB
All DBs
Position
11:74803557..74847227
Genome browser
AA seq
999 aa
AA seq
DB search
MESLKRKTLENHSSPESHSPHKLQKENNGSSIRTSDEPVACLHDVSYPDRYVPRPKSAVK
INGPDASRPAKEFEFELDPFQSESIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRDKQ
RVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIM
REVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQP
CHIVYTDYRPTPLQHYIFPSGGDGLYLVVDENGIFREDSFQKSLNALVPAGEGDKKRENG
KWQKGLFAGKSGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNDDDEK
VNIESIFWSAMDLLSDDDKKLPQVSNMLPLLRRGIGVHHSGLLPILKEVIEILFQEGLIK
CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDARGICIL
MVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRCEDGDPENLLRHSFYQFQSDRA
LPDLEKQAKDLEEERESIVIEEEDSLNDYYNLLQQYKSLKKDVRDIVFSPRYCLPFLQPG
RLVCIQCPRSDDKTSSFSMEDQVTWGVIINFERVKGLVEDDASRKPEDANYTVDVLTRCV
VDKDTVGRKSIKIVPLREPGEPVVVSLPISQIDSLSSVRLIIAKDLLPLEARENTLKKVS
EVLHRFAKEGMPLLDPEDDMKVQSNSYKKAVRRMEALEGLFDKHEVAKSPLIQQKLKVLH
MKQELTAKIKSIRKAMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSA
DELTLTELMFSGVLKDVNVEEMVALLSCFVWQEKLQDAQKPREELDLLFSQLQETARRVS
KVQLECKVQIDVENFVNSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEV
LQQLIQATKSIGETQLESKFEEAVSRIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagtctctgaagaggaaaaccttagaaaatcactcttctccagaatcccattctcca
cacaagcttcagaaagagaacaacggctcgtcaatccgcaccagcgatgagcccgttgct
tgcctgcacgacgtctcttatccggacaggtacgtcccacgcccgaaatctgctgtgaaa
atcaacggcccagatgcatcacggcctgcgaaggaattcgagttcgagcttgacccgttc
cagtctgaatccataaagtgccttgataatggtgaatctgtcatggtatcagcccataca
tcagcaggaaagaccgttgtagcactatatgctattgccatgtcattgcgagacaagcaa
cgggtgatctacacatctccaatcaaggctctcagcaaccaaaaatatagagaattcaaa
gaagagttctcagatgtcggtctgatgacgggagatgtaactattgagcccaatgcttca
tgcttggtcatgacaacagaaatttggcgtagtatgcaatacaaaggatccgaaattatg
cgggaggttgcttggattatattcgatgaggtacattacatgcgtgacagggaaagaggt
gtggtttgggaagaaagcattgttatggctccaaagaactcacgttttgtattcctctcg
gctacagtgcccaatgccaaggagtttgcagattgggtggccaaggttcaccagcagccc
tgccatattgtttataccgattatcgacctacgccacttcagcattatatttttccttca
ggaggagatggtctatacttggtggtggatgaaaatggaatatttcgggaggatagcttt
cagaagtctttgaatgcacttgttccggctggtgaaggagacaaaaagcgggagaacgga
aagtggcaaaaaggattatttgctggtaaatcgggtgaagagagtgatatcttcaagatg
gtgaaaatgataattcagcgacaatatgatccagtgatacttttcagctttagcaaaagg
gaatgtgaatttcttgcaatgcagatggcaaagatggatctaaatgacgacgatgaaaaa
gttaacatagaaagtatcttttggagtgcaatggatctcctctcagatgatgacaagaag
ctcccacaggtgtcaaatatgttacccttgttgagacgtgggataggtgtccaccactct
ggcctgcttcctattttgaaggaagtgatcgagatactctttcaagaaggtctcatcaag
tgcttgtttgccacagaaaccttcagcattggtttgaacatgcctgccaaaactgtggtg
tttacaaatgtgcgcaagtttgatggagataagttcagatggttatccagtggagagtat
atacaaatgagtggtcgtgctggccgtcgaggtattgatgcacgtggaatttgcatcctc
atggttgatgagaagctggagccatcgacagccaaaatgatgttgaaaggaagtgctgac
tgtctgaacagtgctttccatctaagctacaacatgcttttaaatcaaatgcgttgtgaa
gatggcgacccagagaatttgcttaggcattcattttatcagtttcaatctgaccgtgcc
cttcctgatctcgagaagcaagcaaaggatctggaagaagagagagaatctattgtgatt
gaagaagaggatagcttgaatgactattacaacctcttacagcagtacaaaagtctgaag
aaggacgtccgtgatattgtgttttcacctaggtactgtttacccttcttgcagcctggc
aggttagtgtgtattcaatgcccaaggagtgatgataagacctcatcattctccatggag
gaccaggttacatggggagttataatcaattttgaaagggtgaaaggccttgttgaagat
gatgcaagtaggaaacctgaggatgccaattatacggttgatgttcttacgagatgtgtt
gtggacaaagatacagttgggaggaaatcaattaagattgttcctttaagagagcctggg
gagcctgtggttgtttccctgccaatatctcagattgatagcttgagcagtgtccgcctg
ataattgcaaaggatcttttgcctttggaagctcgagaaaacactctgaaaaaagtttct
gaagttcttcatagatttgctaaagaagggatgcccctcctcgatcctgaagatgatatg
aaggtccaaagcaattcgtacaaaaaagctgttcggcggatggaggctctggagggcttg
ttcgacaagcatgaagttgcgaagtctcctcttatccagcaaaagctcaaagttttacac
atgaagcaagagttgacggccaagataaagtcaattagaaaagcaatgcgttcttccaca
gcattagctttcaaagatgaacttaaagcacggaaacgggttcttaggagactaggatat
gttacgagtgatgatgttgtcgagttgaaggggaaggttgcctgtgaaatcagtagtgct
gatgaattgacattgacagagcttatgtttagtggggtgctgaaggatgtcaatgtggag
gagatggtggctcttctttcatgttttgtgtggcaggagaagctgcaagatgctcagaaa
cctagggaagagcttgacttgctcttctctcagcttcaagagacggcaaggagggtttcc
aaggttcaacttgagtgcaaggtccaaatcgacgtagagaatttcgttaattcttttcgg
cccgacatcatggaagctgtgtacgcatgggcaaagggatctaaattttacgagatcatg
gagatcacacaagtattcgagggcagcttgatcagggccattagaagattggaggaggtt
ctccaacagcttattcaggcaacgaaatccatcggggaaacccaacttgaatcaaaattc
gaggaggctgtttcaaggatcaagcgtgacattgtcttcgctgcatctctatatttgtag
DBGET
integrated database retrieval system
