KEGG   Magnolia sinica: 131219375
Entry
131219375         CDS       T09699                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
  KO
K07466  replication factor A1
Organism
msin  Magnolia sinica
Pathway
msin03030  DNA replication
msin03420  Nucleotide excision repair
msin03430  Mismatch repair
msin03440  Homologous recombination
msin03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131219375
   03420 Nucleotide excision repair
    131219375
   03430 Mismatch repair
    131219375
   03440 Homologous recombination
    131219375
   03460 Fanconi anemia pathway
    131219375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:msin03000]
    131219375
   03032 DNA replication proteins [BR:msin03032]
    131219375
   03400 DNA repair and recombination proteins [BR:msin03400]
    131219375
Transcription factors [BR:msin03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    131219375
DNA replication proteins [BR:msin03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    131219375
DNA repair and recombination proteins [BR:msin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     131219375
   MMR (mismatch excision repair)
     131219375
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     131219375
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 tRNA_anti-codon DUF223 PhoD_N
Other DBs
NCBI-GeneID: 131219375
NCBI-ProteinID: XP_058070460
LinkDB
Position
11:74851178..74859073
AA seq 607 aa
MAGSVTTGAIATLLSNPSPDSSSPQTPAIVIQVVDLKPVGNSTTRFTFMANDGKMTLKAM
LPTHFSSEIHSGKLQNLGLISILDYTCNAIPNQPGKCLIVTKCEVVSPALEMEIKTEIKR
EETGIVLKPKQETITKSAAQIVQEQHGNSAPAARMAMTRRVHPLVSLNPYQGSWTIKVRV
TSKGNLRTYKNARGEGQVFNVELTDEDGTQIQATMFNGAATKFYPKFELGKVYFISRGTL
RVANKQFKTVQNDYEMTLNENSEVEEVIGEECTFIPETKFNFVQIDQLGSYVNGRELVDV
IGVVQNVSSTLSVRRKSDNESIPKRDITIADESKKTVTVSLWNDLATNVGQELLDTVDAA
PVVAIKCLKVGDFQGLSLSSISRSTVLINPDMPESKKLRSWYDSEGKGTSMASVGSSMVS
GSSKVGARSMYSDRVFLSHIVSDPSMGQDKPLFFTVKVYISYIKPEQAMWYRACKTCNKK
VTEAVGSGYWCEGCQKNDVECSLRYIMVVKVADATGEAWFSVFNEQAEKIIGCSADELDR
IKSEDDKTFQLKLKEAMWVPHLFRVSVAQTEYMNEKRQRITVRSQAPVDWSAESKYLLEE
VSKMSIS
NT seq 1824 nt   +upstreamnt  +downstreamnt
atggctggatctgttactacaggggccattgccacccttctttcaaatccatctcccgat
tcttcttcccctcagacgccggcgatcgtcatccaagttgtcgatctcaaacccgtcggc
aacagcactactcgattcacgtttatggctaatgatgggaagatgacgctgaaggcaatg
cttccaacccatttctcttcagaaatacattctggaaaacttcagaaccttggtctgatt
tctattcttgattatacctgcaatgccattccaaatcagcctggaaaatgtttgattgtc
acaaaatgtgaagtggtttctcctgcactcgaaatggagatcaaaactgaaataaaaaga
gaagaaacaggaattgttttgaagccaaagcaggaaacaattacaaaatctgctgctcag
attgtgcaagaacaacatggaaattctgctcctgctgcacgtatggccatgacaagaaga
gttcaccctcttgtttccttgaatccttatcaagggagctggaccataaaggttcgggtc
acaagcaaaggcaatttgcgcacgtataagaatgcaagaggcgaaggccaagtcttcaat
gtagagttaacagatgaagatggtacccaaatacaagcaactatgtttaatggagctgca
accaagttctaccccaagtttgaattgggaaaggtttacttcatttctagaggaaccctt
agagttgcaaacaaacaattcaaaaccgttcaaaatgattatgagatgaccttaaatgag
aactctgaggttgaagaggtaattggagaagaatgcacatttattccagaaacaaaattc
aactttgtccagattgatcagttaggttcatatgtgaatggaagggaacttgttgatgtt
attggagttgttcagaatgtttcaagtactttaagtgtacgaaggaagagtgacaatgaa
agcattccaaagcgtgatatcacaattgctgatgagtcgaagaagacagttactgtctct
ttgtggaatgatctggccacaaacgttgggcaggagttgctggatacggttgatgctgcc
ccagttgtagcgataaaatgtcttaaagtgggagattttcaaggactatctctgtcgtcg
atcagcagaagcactgtactgataaatccagatatgccagaatcaaagaagctgagatcc
tggtatgattctgaaggcaaaggaacttcaatggcctcagttggctctagcatggtctct
ggttcatcaaaggtgggggccagatccatgtattctgatagagtcttcctctctcatatt
gtcagtgatccatccatgggccaggataagcctttgtttttcactgtcaaggtttatata
agctacatcaagcccgaacaggcaatgtggtatcgggcatgtaagacatgcaataagaaa
gtgacagaagccgttggatctgggtattggtgcgaaggatgccaaaagaatgatgtggaa
tgcagtttaagatacataatggtggtgaaggttgcagatgcaactggagaagcttggttt
tctgttttcaatgagcaggcagagaagattattgggtgttctgcagatgagcttgatagg
atcaagtcagaggatgacaaaacattccagctcaagttgaaagaagcaatgtgggtccca
catctattcagagtcagtgtggcacagactgagtacatgaatgagaaaaggcagaggatc
acagtcaggagccaggccccagttgattggtcagctgaatcaaagtacctgttagaagag
gtgtccaagatgtccatctcttaa

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