Magnolia sinica: 131219579
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Entry
131219579 CDS
T09699
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
msin
Magnolia sinica
Pathway
msin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131219579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131219579
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
131219579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
131219579
NCBI-ProteinID:
XP_058070786
LinkDB
All DBs
Position
11:84314821..84339520
Genome browser
AA seq
538 aa
AA seq
DB search
MSFDLFLKPSCGGCGSTTDLYGSSCKHMTLCLSCGKTMAKSHTKCYECGVPISRLIREYT
VRASGSTDKTFYIGRFITGLPNFSKKKNAENKWSLQKDGLQGRQMTDALREKYKNKPWLL
EDETGQYQYQGQLEGSQSANYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRRKSAEGYQRWMMKAANNGPAAFGDVEKNDGNTGGAEGGRRRKGNGEDEEDAAHSDKG
EEDEEEEMSRKNRLGLNRKSGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEEREDLAPEVPAPPEIKQDEDDEDEGEEGEGTQGKLSKSGKELKKLLGRAGGLNESD
AEDDDDDDDMDDEIGMSPVLAPKQKDAPKEEPTDNSPSKPAPARGTPQSKSSKAKRKSSS
DDAKSANGAPSKKAKADNDSKPSVKDEAPSASKSNVPSKGSSTSSRTGATPSAEPVTEDE
IRAVLLQMAPVTTQDLVAKFRARLKAPQDKTAFAEILRKISKIQKTNNGPSYVVLRDR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatcttttcctgaagccgtcgtgcggcggctgcggatcgacgaccgatctc
tacggcagcagctgcaagcacatgaccctctgcctctcctgcggcaagaccatggccaag
agccacaccaaatgctacgaatgcggagtacccatctcccgcctcatccgcgagtatact
gtgcgagcgagtggaagcaccgacaagactttctatattggaagattcattacaggcttg
ccgaatttctcaaagaagaagaacgctgagaataagtggtctcttcagaaagacgggctt
caggggcgtcagatgacggatgctctgcgggagaagtacaagaataagccttggcttctg
gaggatgagacaggtcaatatcagtatcaaggtcagcttgagggctcacaatctgctaat
tattatctgctgatgatgcaaggaaaggagtttgtcgctatccctgctggctcctggtac
aactttaacaaagtagcccaatataagcaacttacattagaagaagctgaagagaaaatg
aagaatcggaggaagagtgctgagggatatcaaagatggatgatgaaagcagcaaataat
ggacctgctgcctttggtgatgtggagaagaatgatggcaacactggtggggctgagggt
ggtcgtcgcagaaaaggaaatggtgaagacgaggaagacgctgctcactcggataagggg
gaggaagatgaggaagaagagatgtcaaggaaaaatcggttggggctcaacagaaaaagt
ggggatgacgatgaagaaggtccaagaggaggggatcttgacttagatgatgatgacatt
gaaaagggcgacgactgggagcatgaggaaattttcactgatgatgatgaagctgtgggt
aacgacccggaggaacgggaagatttggctcctgaggttcctgcacctccagaaatcaag
caggatgaagatgatgaggatgaaggcgaagaaggggagggaactcagggaaagctgagc
aaatctgggaaggagttgaaaaagctgcttggacgagctggtggactaaacgaatctgat
gctgaggatgacgacgacgatgatgatatggatgatgagattggcatgtcccctgtactt
gctccaaaacagaaggatgcacctaaagaggaacctactgacaacagcccctctaaacca
gcacctgctcgaggaactcctcaatccaagtcatctaaggcaaagaggaaatcaagcagt
gatgacgcaaaatcagctaatggtgcaccttcaaaaaaagcaaaggctgataatgactcg
aagccatctgtaaaagatgaggccccctctgcttccaagagtaatgtaccttcgaaaggt
tcatcaacctcttcgagaactggagcaacaccatctgcagagcctgtcactgaggatgaa
attcgggctgttctgttgcaaatggctccagtgacaacacaagatcttgttgcgaaattc
agggcaagactaaaagccccacaggataagacggcttttgcggaaattctgaggaaaata
tctaaaatacagaagacaaacaatggaccaagctatgttgtgttgagggatagataa
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